FMO06554.5prime Sequence
738 bp (738 high quality bases) assembled on 2008-09-24
> FMO06554.5prime
CCTATACGAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAAC
TTTATTTTATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACT
GATCGTGTTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCG
CGGGGAGTGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTG
GGAGGCCTCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCG
GCAGAGTGTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCT
TTATCCTGCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCC
TTCCTGGGCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGA
CTACACTGCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATA
CGAGCTATACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGC
TGCGGCTACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCA
GTCGAGGCCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACA
TGGACATCATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTC
GTCTTCCTCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGC
AGGTCGCCAGGTGTACGCCGCAAGCCTTTCTAGACCAT
FMO06554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ec-RA | 1025 | CG12847-RA | 132..827 | 24..719 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7007980..7008424 | 275..719 | 2225 | 100 | Plus |
| 2R | 25286936 | 2R | 7007725..7007917 | 83..275 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 7001437..7001514 | 83..160 | 390 | 100 | Plus |
| 2R | 25286936 | 2R | 7000285..7000344 | 24..83 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 7006573..7006632 | 24..83 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:31 has no hits.
FMO06554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:50 Download gff for
FMO06554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ec-RA | 127..834 | 19..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:39 Download gff for
FMO06554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ec-RA | 122..829 | 19..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:13 Download gff for
FMO06554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ec-RA | 127..834 | 19..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:13 Download gff for
FMO06554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7006568..7006632 | 19..83 | 96 | -> | Plus |
| 2R | 7007726..7007917 | 84..275 | 100 | -> | Plus |
| 2R | 7007981..7008431 | 276..728 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:50 Download gff for
FMO06554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2894073..2894137 | 19..83 | 96 | -> | Plus |
| arm_2R | 2895231..2895422 | 84..275 | 100 | -> | Plus |
| arm_2R | 2895486..2895936 | 276..728 | 99 | | Plus |
