FMO06555.5prime Sequence
812 bp (812 high quality bases) assembled on 2008-09-24
> FMO06555.5prime
CAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAGTGGTCCTC
GTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTCATCGGCAG
TCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGCCCTGCCCA
CCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGATCGACAAG
TACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCCACTGGCTT
TAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCAGACGCCTG
CTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACAATGTGCGT
CGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCGCATGCCGA
CTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCTCCGACTGG
AATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCGGAGGGGTG
TCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTCAAGGTGAC
GCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCAGCCCTCGC
CCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCAAAATCGAG
CTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTGCCATACGA
ACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCTCGATGCCG
ACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTGTGCATCGCAAGC
TTTCTAGACCAT
FMO06555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2034-RB | 1284 | CG2034-RB | 247..1032 | 9..794 | 3900 | 99.7 | Plus |
| CG2034-RA | 1149 | CG2034-RA | 112..897 | 9..794 | 3900 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2257870..2258517 | 56..703 | 3225 | 99.8 | Plus |
| 3L | 28110227 | 3L | 2258579..2258670 | 703..794 | 445 | 98.9 | Plus |
| 3L | 28110227 | 3L | 2257754..2257807 | 9..62 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:55 has no hits.
FMO06555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:19 Download gff for
FMO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2034-RA | 112..903 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:41 Download gff for
FMO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2034-RA | 86..877 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:39 Download gff for
FMO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2034-RA | 112..903 | 9..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:39 Download gff for
FMO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2257754..2257802 | 9..57 | 100 | -> | Plus |
| 3L | 2257872..2258517 | 58..703 | 99 | -> | Plus |
| 3L | 2258580..2258676 | 704..801 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:19 Download gff for
FMO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2257754..2257802 | 9..57 | 100 | -> | Plus |
| arm_3L | 2257872..2258517 | 58..703 | 99 | -> | Plus |
| arm_3L | 2258580..2258676 | 704..801 | 95 | | Plus |
