FMO06556.5prime Sequence
801 bp (300 high quality bases) assembled on 2008-09-24
> FMO06556.5prime
CAGTCGACATGAATCTGGAATCTCTGTTCCGCGACTTCAATCCCTGCAAG
TTCATCGTCCACTGCAGCCTGTTCATCTTTGTCACGCTCTTCGCCTTGCG
CCTCGACAACTACATTGATTGGCCCTACTGGGCGATTTTCACACCGCTAT
GGATATGGAAATGCACCGCCATCCTGGGCGCAATCGTAGGAGCCATTGTG
TGGTGTCGGTATCCGCATTATCGTCTCGAGGGCGATGCCTACACGCAGTT
CAAAGCGATGCTCATCTCACTGGCCCTGCACCTGATCCTGCTGATGTTTG
AGCTGCTGGCCTGCGATAAGCTGACCTCGGACCGTCACTTGGGGGGTGCT
GGGCCTTCATTCCGCTGATCTTCGGCTCGGGGGTTAGTGGGGGGCGCCTG
TGCCGGGGCCGTCAAGCACGATCCCCTCCTTCAAACTTGGACTTCTTCCT
GGGGGTCAACCCGCTTTATTTTGTTTTCCTGGCCGCCAAAACTGGATCGT
TTTTTTTTCTGAAACTGGAAACAAATGGTTTGGCCCCTTGGGATCGTCAA
AGCCCTGAAACCGGTCCCGGTATTGAAAAAATCCCTTTTTTGGGGATCAA
TATGGACCCCCGAAAGTTCCCTGTCACAAAAAAAGGGGGATTTAACCCCC
GGGGGGGGAAAATTTTGCCGGGGGCCCCCAGGTCTGTTTTCGGGGGGGCC
CCCAAAAAACTGAGAGGAAAAATTTTCCCAAAAACGGGGTTTCTCCCGGT
GCCCCCTTTTTTTTGGGCAAAAATTTTTTTCCCCCCCCCAAAAGGTCTAA
T
FMO06556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14194-RA | 1940 | CG14194-RA | 276..781 | 7..518 | 2050 | 94.1 | Plus |
| CG14194-RB | 1868 | CG14194-RB | 386..709 | 189..518 | 1140 | 90.9 | Plus |
| CG14194-RB | 1868 | CG14194-RB | 276..386 | 7..117 | 555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19194423..19194818 | 117..518 | 1350 | 92.5 | Plus |
| X | 23542271 | X | 19193947..19194018 | 46..117 | 360 | 100 | Plus |
| X | 23542271 | X | 19193830..19193869 | 7..46 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:22 has no hits.
FMO06556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:15 Download gff for
FMO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14194-RA | 271..705 | 1..441 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:14 Download gff for
FMO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14194-RA | 259..693 | 1..441 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:29 Download gff for
FMO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14194-RA | 271..705 | 1..441 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:29 Download gff for
FMO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19193825..19193869 | 1..46 | 95 | -> | Plus |
| X | 19193948..19194018 | 47..117 | 100 | -> | Plus |
| X | 19194424..19194799 | 118..499 | 93 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:15 Download gff for
FMO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19087858..19087902 | 1..46 | 95 | -> | Plus |
| arm_X | 19087981..19088051 | 47..117 | 100 | -> | Plus |
| arm_X | 19088457..19088832 | 118..499 | 93 | <- | Plus |
