FMO06557.5prime Sequence
494 bp (494 high quality bases) assembled on 2008-09-24
> FMO06557.5prime
CAGTCGACATGGAGTCCGAGTCGTTTTATGGTGTCACACTCAGCGAGAAG
GAGGCCATCGCACAGTTCGAGGTCCCAGATGTACCCGAGGAGTACATCGT
CCACTCGCACAAGCTCATCATCAAACAGATTTCCCTCGGCCCAGAAGCGA
AGACCGGCGAATTCAACGTTGTACAGGCGGAGACGAACATAAACGACGAT
GGCGAGAAGAAAACCTTGAAGATCCCCATTGCCGTGTTGAAGGTCGGCGA
GACCCGTAGCTTAAGACCAAATGTCGAGTTCCCCAATGGATCAGTGACCT
TCAAACTGGTGCAGGGAAGTGGACCCGTACACGTATGCGGCAAGGTCGAG
ATGAACTTTGGCGAGTTTGACGACGGTCAGATTTACGAGGAGTATTCGGA
CGAGGAGGAGGATAGCGAACTGGAATTCGACGAAGAAGCAGCTCCTCAGA
CGAACGGCAAGAGTAATAAGAAGAAGGCAAGCTTTCTAGACCAT
FMO06557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7911-RB | 656 | CG7911-RB | 97..564 | 9..476 | 2340 | 100 | Plus |
| CG7911-RA | 818 | CG7911-RA | 259..726 | 9..476 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30003988..30004160 | 346..174 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 30004303..30004450 | 177..30 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 30003773..30003906 | 476..343 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:17 has no hits.
FMO06557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:45 Download gff for
FMO06557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7911-RA | 253..726 | 1..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:46 Download gff for
FMO06557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7911-RB | 73..546 | 1..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:01 Download gff for
FMO06557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7911-RA | 253..726 | 1..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:01 Download gff for
FMO06557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30004304..30004449 | 31..176 | 100 | <- | Minus |
| 3R | 30003773..30003904 | 345..476 | 100 | <- | Minus |
| 3R | 30003990..30004157 | 177..344 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:45 Download gff for
FMO06557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25829495..25829626 | 345..476 | 100 | <- | Minus |
| arm_3R | 25829712..25829879 | 177..344 | 100 | <- | Minus |
| arm_3R | 25830026..25830171 | 31..176 | 100 | <- | Minus |
