FMO06558.5prime Sequence
835 bp (835 high quality bases) assembled on 2008-09-24
> FMO06558.5prime
CAGTCGACATGGCATCTGTGGACGTCGGCTCCAACAATCAAGTTACTGTT
ACCGTGCCAAATTCTGAAAGTTCCGGAGTGCCTCATACAGTTTATAAGGG
AAATCAGAGAGAGTATGCAAAGGAGTGTTTGATGATCTACGACAAGGAGA
CGGGCGCCATCACCATAGAAAAGCTAAACCACAATATTCAAGTGAAGAAG
ACCAGGAATGAAGTCACCAACAAGTCAGTCCAGCTGCCTGGTCAGAACAT
GGGTCAGCCCCACAATCAGGGTGCGAACGGAGCGGCACCAGTCGCGGTCC
CGGTACCTGGTCAAGGCTCGGGAACGGCACCCAAAATGGAGAATAGCACC
ATGCGAATCTCAACCAAGACGAAGGTTTCTACCGGCAGCCGTAGAAACAA
TATTATTGACTTCAAGCCGCGCAATTCGCCAATGCAACAGAACTCACCAT
CGCGTCCAGTGCCAGTCCACCGCAGTCCCCAATCTGCGCCGGCTTGGGAT
GCTAACAATGCACAGCAGACGCTGCCCAGCATTCCCCTGATCACCGACGA
CGACGACTTTGGGTTGAGAGCCGCCCTGCACAACAGCGGACATGGGAATA
CGTCAGGCACCGCGGCAGGTCAACCGGATTTCGGATCTACGTCCTCGTTC
ACGCACATTGGCAAGCAGCGGCAGGCTCCTCCGCATGGCCATGGAAAGCG
CCAGCAGATGCACCAGCGCCTCAGCCCACCAAATGGCTCAGCAGCAGCAG
CCATCTACTATGGGCGTGGTTACAATGGCGGCCACAACCACGCACAACAG
CAGCAGCACCATCAACGCACTCGCCGCAGCAGCAG
FMO06558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaf-RB | 2041 | CG11166-RB | 518..1346 | 8..835 | 4060 | 99.5 | Plus |
| Eaf-RA | 3095 | CG11166-RA | 1572..2400 | 8..835 | 4060 | 99.5 | Plus |
| Eaf-RD | 3869 | CG11166-RD | 970..1798 | 8..835 | 4060 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7398982..7399324 | 835..494 | 1555 | 98.8 | Minus |
| 2R | 25286936 | 2R | 7399616..7399818 | 405..203 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 7399873..7400013 | 206..66 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 7399379..7399466 | 493..406 | 440 | 100 | Minus |
| 2R | 25286936 | 2R | 7406038..7406096 | 66..8 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6771 | 784..834 | 122 | 73.1 | Plus |
FMO06558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:08 Download gff for
FMO06558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaf-RD | 964..1798 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:42 Download gff for
FMO06558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11166-RA | 1572..2406 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:20 Download gff for
FMO06558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaf-RD | 964..1798 | 1..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:20 Download gff for
FMO06558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7398982..7399324 | 494..835 | 98 | <- | Minus |
| 2R | 7399379..7399466 | 406..493 | 100 | <- | Minus |
| 2R | 7399616..7399815 | 206..405 | 100 | <- | Minus |
| 2R | 7399874..7400012 | 67..205 | 100 | <- | Minus |
| 2R | 7406038..7406102 | 1..66 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:08 Download gff for
FMO06558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3286487..3286829 | 494..835 | 98 | <- | Minus |
| arm_2R | 3286884..3286971 | 406..493 | 100 | <- | Minus |
| arm_2R | 3287121..3287320 | 206..405 | 100 | <- | Minus |
| arm_2R | 3287379..3287517 | 67..205 | 100 | <- | Minus |
| arm_2R | 3293543..3293607 | 1..66 | 96 | | Minus |
