FMO06559.5prime Sequence
383 bp (383 high quality bases) assembled on 2008-09-24
> FMO06559.5prime
CAGTCGACATGGAATACGGAAATGGTATGCAATACGATGGTTATAGCCAA
GGTGGCGAGGGCTTTGAAATGCTGTACAACCAAACGAGCAGTGGCCATGG
ATATAGCCAGCAGCAGAGTAATTGCGGACAAGGTTCTTCAAATTTTAATG
GTGCATCTGCATCGCTTGGTGGTCCTGGCTATCGCAGTCCCTTGCGATAC
ACAAAAATGCTTCGTGAGATGAACTCTCGCAACGGGCTTTACAGCGGAGC
AGTGGGCAAGGCGACTACTATAATACATTGCCCGGCCTTGGCGGCCCAGA
AGGTCAAGCTTATCAGTCGCGGGGCAATGGAAATCCATACTACTAAAGTA
AACCCATGCACTTCGGCAAGCTTTCTAGACCAT
FMO06559.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15219-RC | 505 | CG15219-RC | 111..468 | 8..365 | 1790 | 100 | Plus |
| CG15219-RA | 521 | CG15219-RA | 111..484 | 8..365 | 1620 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22105116..22105299 | 241..58 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 22104928..22105051 | 365..242 | 620 | 100 | Minus |
| 2L | 23513712 | 2L | 22105350..22105402 | 60..8 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:47 has no hits.
FMO06559.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:38 Download gff for
FMO06559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15219-RC | 107..468 | 1..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:43 Download gff for
FMO06559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15219-RA | 101..338 | 1..241 | 98 | <- | Plus |
| CG15219-RA | 353..478 | 242..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:05 Download gff for
FMO06559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15219-RC | 107..468 | 1..365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:05 Download gff for
FMO06559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22104928..22105051 | 242..365 | 100 | <- | Minus |
| 2L | 22105116..22105297 | 60..241 | 100 | <- | Minus |
| 2L | 22105351..22105406 | 1..59 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:38 Download gff for
FMO06559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22104928..22105051 | 242..365 | 100 | <- | Minus |
| arm_2L | 22105116..22105297 | 60..241 | 100 | <- | Minus |
| arm_2L | 22105351..22105406 | 1..59 | 94 | | Minus |
