FMO06560.5prime Sequence
647 bp (647 high quality bases) assembled on 2008-09-24
> FMO06560.5prime
CAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCCCTTTTGAC
TCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGTACGACATC
GGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGATCAACGGTG
GCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATGTCATTTAC
ATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCCATGATTAT
GAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGCCCAGCAGA
GACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACAATTGCAAC
GGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAGAACGAAGT
TAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGACGAGGCCG
CTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCACCAGCTTG
GAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCACCGCCGGT
TTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCACCACCGTAT
TTTTGGTCAACGGCCATCCACCAGTGGTGGCAAGCTTTCTAGACCAT
FMO06560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4741-RA | 881 | CG4741-RA | 97..719 | 7..629 | 3100 | 99.8 | Plus |
| CG4741-RB | 854 | CG4741-RB | 367..692 | 304..629 | 1600 | 99.4 | Plus |
| CG4741-RC | 880 | CG4741-RC | 437..758 | 308..629 | 1595 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24610963..24611284 | 629..308 | 1595 | 99.7 | Minus |
| 2R | 25286936 | 2R | 24614033..24614277 | 251..7 | 1225 | 100 | Minus |
| 2R | 25286936 | 2R | 24613914..24613972 | 309..251 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:21 has no hits.
FMO06560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:16 Download gff for
FMO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RA | 89..722 | 1..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:45 Download gff for
FMO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RA | 72..705 | 1..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:17 Download gff for
FMO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RA | 89..722 | 1..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:17 Download gff for
FMO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24610960..24611282 | 310..633 | 99 | <- | Minus |
| 2R | 24613914..24613971 | 252..309 | 100 | <- | Minus |
| 2R | 24614033..24614283 | 1..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:16 Download gff for
FMO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20498483..20498805 | 310..633 | 99 | <- | Minus |
| arm_2R | 20501437..20501494 | 252..309 | 100 | <- | Minus |
| arm_2R | 20501556..20501806 | 1..251 | 98 | | Minus |
