Clone FMO06561 Report

Search the DGRC for FMO06561

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:65
Well:61
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9040-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06561.5prime Sequence

509 bp (509 high quality bases) assembled on 2008-09-24

> FMO06561.5prime
CAGTCGACATGAGGCTGCTGTTGGTTTTAAGCCTGGCCATATTGGTTGCC
TTCGTAACGGGTGCTGATGACACTGACGATGACTATTACGATTATTACGA
CTATGGTGATGACTACTATGACGACTCTGATGTAGAGTCCAGTTCGGAAA
GTGGTGTTGGTGCATCCAGTAGCTCAGAAGATGATGCTAGTACCTCCGAG
GACAGTTCCTCCGGCGAAGCTTCCGATACAGGTAGTTCTTCAGAAACTTC
TGGAGATGGTTCCTCCGCCGAAACGACCTCCAGTTCAACTCCAACCAAGG
CAGAAAAAGCCAAGAAAACTGCTGCACGCAGAGCTAGACGGCGCAGGCGC
ACCACCACCGCTGCTCCCAAACGCAAAGTAGCGGCAGCCGCGTCTGCCAA
GAAGCAAACACCTGTTGCCCAAAAGAAGAAGACACCTGTGGCAGCCAAGA
AGAAGGCGAATACTGCCGCCAACAAACGCAAACGCACAGGCGCAAGCTTT
CTAGACCAT

FMO06561.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-RA 749 CG9040-RA 65..547 9..491 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13987942..13988424 9..491 2415 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:27:53 has no hits.

FMO06561.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:40 Download gff for FMO06561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..557 9..501 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:14 Download gff for FMO06561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 44..536 9..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:07 Download gff for FMO06561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..557 9..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:07 Download gff for FMO06561.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13987942..13988434 9..501 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:40 Download gff for FMO06561.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13981042..13981534 9..501 99   Plus