FMO06562.5prime Sequence
554 bp (554 high quality bases) assembled on 2008-09-24
> FMO06562.5prime
CAGTCGACATGGACACCGCCGGCATTATTCCCGACATCATCGACGTCAAG
CCCGCCTCCAAGGCCACCATCACCTATCCTTCCGGCGTTCAGGTTGAGCT
GGGCAAGGAGCTGACTCCCACTCAGGTGAAGGACCAGCCCACTGTCGTCT
TCGATGCCGAGCCCAACTCCCTGTACACCATCCTGTTGGTGGACCCCGAC
GCACCCAGCCGCGAGGACCCCAAGTTCCGTGAGCTGCTCCACTGGCTGGT
GATCAACATTCCCGGCAACAAGGTGTCCGAGGGCCAGACCATCGCCGAGT
ACATCGGTGCTGGACCCCGCGAGGGAACCGGCCTGCACCGCTACGTCTTC
CTGGTGTTCAAGCAGAACGACAAGATCACCACCGAGAAGTTCGTGTCCAA
GACCAGCCGCACTGGCCGCATCAACGTCAAGGCCCGCGACTACATCCAGA
AGTACAGCTTCGGCGGTCCCGTGGCCGGCAACTTCTTCCAGGCCCAATAC
GATGACTACGTGAAGACCCTCATCGAGACGGTCCAGGCAAGCTTTCTAGA
CCAT
FMO06562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 646 | CG18594-RA | 56..585 | 7..536 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22466089..22466618 | 7..536 | 2650 | 100 | Plus |
| 3R | 32079331 | 3R | 6344653..6344827 | 191..365 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:34 has no hits.
FMO06562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:20 Download gff for
FMO06562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 50..591 | 1..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:15 Download gff for
FMO06562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-RA | 1..534 | 9..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:10 Download gff for
FMO06562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 50..591 | 1..543 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:10 Download gff for
FMO06562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22466083..22466624 | 1..543 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:20 Download gff for
FMO06562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18291805..18292346 | 1..543 | 98 | | Plus |
