FMO06563.5prime Sequence
1239 bp (996 high quality bases) assembled on 2008-09-24
> FMO06563.5prime
CAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGCTGCTCCTC
CTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAGCTCACCGT
CGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGACTTTTCTGG
TGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGCTGGGAACA
GATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTGTATCCAGC
GGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAAAGCCGGCA
ACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGATTGTGAAG
GATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTGATCTACAC
CTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGTGTCCTTCT
ATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGGGACTGAAC
TTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTACAGCATGTT
CAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTACGAGGTGC
GATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGGTCTTCTCA
CTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGCTTTTTCTA
TCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAATATTGGCCA
TCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAGGATCCCGT
CATCCATTGGCTGGACTTTCTGTACTACTGCAGTTAACGTCAAGCTAACC
ATTACCATCATCAAGTACGTGCCGCAAGCTCTGATGAACTATCGCCGGGA
GAGCACCTCCGGCTGGAAGCATCCGCAAACATTCTGCTGGATTCACCGGG
AGGACGCTGAGCATGCTGCAATTGATTCTGAATGCTCATAATTACGATGA
TTGGGTGTCGATTTTCGTGATCCCACCAATTCGGACTGGGTCTGTTTTCC
TGCTCTCTCGATGTGTTCTTTCAGCTGCAGCACTATGGTTTACGGCATTC
CAAGGAATCCCTCGAGCTCTTGAACCTCCCCACCGTGAATCGATGTTCAA
ATCGAACCAATGGATGCCGCCTGCCAAGCTAGTACAACATGCAATATGTC
AAGCCTTTCTAGACACTTCTTGTGCCCCAAGCTCCCCGG
FMO06563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1455 | CG17119-RC | 149..1301 | 9..1162 | 5175 | 97.5 | Plus |
CG17119-RA | 1495 | CG17119-RA | 189..1341 | 9..1162 | 5175 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23055363..23055723 | 704..344 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 23054888..23055179 | 996..702 | 1140 | 96.3 | Minus |
3R | 32079331 | 3R | 23055789..23055971 | 343..161 | 915 | 100 | Minus |
3R | 32079331 | 3R | 23056042..23056151 | 160..51 | 535 | 99.1 | Minus |
3R | 32079331 | 3R | 23056199..23056253 | 63..9 | 275 | 100 | Minus |
3R | 32079331 | 3R | 23054739..23054832 | 1087..996 | 230 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:08 has no hits.
FMO06563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:54 Download gff for
FMO06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 181..1292 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:17 Download gff for
FMO06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 180..1291 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:31 Download gff for
FMO06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 181..1292 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:31 Download gff for
FMO06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23054888..23055176 | 705..996 | 96 | <- | Minus |
3R | 23055363..23055723 | 344..704 | 100 | <- | Minus |
3R | 23055789..23055971 | 161..343 | 100 | <- | Minus |
3R | 23056042..23056138 | 64..160 | 100 | <- | Minus |
3R | 23056199..23056257 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:54 Download gff for
FMO06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18881085..18881445 | 344..704 | 100 | <- | Minus |
arm_3R | 18881511..18881693 | 161..343 | 100 | <- | Minus |
arm_3R | 18881764..18881860 | 64..160 | 100 | <- | Minus |
arm_3R | 18880610..18880898 | 705..996 | 96 | <- | Minus |
arm_3R | 18881921..18881979 | 1..63 | 93 | | Minus |