FMO06564.5prime Sequence
377 bp (377 high quality bases) assembled on 2008-09-24
> FMO06564.5prime
CAGTCGACATGCCGGCTGCGGTTGTAACTTCTGATGATGTCGCCATCAGC
ATCTTCCGCCAGCTGAGCGGACTGCTCCTCGTTTTTTGTTTGCCGAACAT
CTCGGCGAGAAAGTGTTCCATCAGCAAAATTAACAGGCCGGGCAGACCAG
ATCGTAGGGCCTTAAAGATGCGCCGTGGATCCACCGGGCTTACGTTCGCT
TTCGTAAGCCGTTTTCTTCGGTACAGTACATGCGTGGCTCGAGATCGGCA
TCTGGTGCGGATATTGGTGATGCGGATCCCGATGAGGATGTGGGTGTTGA
CGTGGGGGAGGCTGCTGCTGCATGGGCAGTTGCTGCATTGCCTGCCATGG
GATCGGCGGGCAAGCTTTCTAGACCAT
FMO06564.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc-13-RG | 12914 | CG2999-RG | 420..770 | 9..359 | 1740 | 99.7 | Plus |
| osa-RF | 10243 | CG7467-RF | 5223..5336 | 359..246 | 285 | 83.3 | Minus |
| osa-RE | 9940 | CG7467-RE | 4920..5033 | 359..246 | 285 | 83.3 | Minus |
| osa-RF | 10243 | CG7467-RF | 5443..5538 | 237..142 | 255 | 84.4 | Minus |
| osa-RF | 10243 | CG7467-RF | 5666..5738 | 110..39 | 220 | 87.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 907337..907554 | 359..142 | 1090 | 100 | Minus |
| 4 | 1348131 | 4 | 907620..907756 | 145..9 | 670 | 99.3 | Minus |
| 3R | 32079331 | 3R | 2925169..2925306 | 9..145 | 340 | 84.8 | Plus |
| 3R | 32079331 | 3R | 2996823..2996960 | 145..9 | 340 | 84.8 | Minus |
| 3R | 32079331 | 3R | 17692725..17692838 | 246..359 | 285 | 83.3 | Plus |
| 2R | 25286936 | 2R | 1247305..1247434 | 137..8 | 270 | 84 | Minus |
| 3R | 32079331 | 3R | 17692523..17692618 | 142..237 | 255 | 84.4 | Plus |
| 3R | 32079331 | 3R | 3344376..3344501 | 16..140 | 250 | 81.7 | Plus |
| 3R | 32079331 | 3R | 3467361..3467455 | 235..141 | 250 | 84.2 | Minus |
| 3R | 32079331 | 3R | 3519179..3519265 | 273..359 | 225 | 83.9 | Plus |
| 3R | 32079331 | 3R | 3467179..3467251 | 359..287 | 200 | 84.9 | Minus |
| 3R | 32079331 | 3R | 17692323..17692395 | 39..110 | 195 | 87.7 | Plus |
| 3R | 32079331 | 3R | 3344679..3344787 | 246..355 | 185 | 80 | Plus |
Blast to na_te.dros performed 2014-11-28 20:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2417 | 335..252 | 132 | 61.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2419 | 345..253 | 123 | 59.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2441..2524 | 336..253 | 123 | 60.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..6962 | 336..203 | 122 | 56.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2422 | 335..253 | 118 | 60.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2828..2874 | 336..290 | 109 | 70.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2665 | 336..289 | 105 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2485..2539 | 337..283 | 104 | 65.5 | Minus |
FMO06564.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 23:42:18 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:19 Download gff for
FMO06564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32021-RA | 271..638 | 1..374 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:35 Download gff for
FMO06564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-13-RG | 416..783 | 1..374 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:35 Download gff for
FMO06564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 907324..907550 | 146..374 | 97 | <- | Minus |
| 4 | 907620..907760 | 1..145 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:18 Download gff for
FMO06564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 927950..928176 | 146..374 | 97 | <- | Minus |
| arm_4 | 928246..928386 | 1..145 | 96 | | Minus |
