Clone FMO06565 Report

Search the DGRC for FMO06565

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:65
Well:65
Vector:pMK33-CFH-BD
Associated Gene/Transcriptpirk-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06565.5prime Sequence

617 bp (617 high quality bases) assembled on 2008-09-24

> FMO06565.5prime
CAGTCGACATGGGCGTTCGTGTGATAGAAACCGATTCGGCGAGCGATTCG
TATGACGATGACGAGTGCTCCACTTGCCAGAAAGAGCACGAGCAGGGTAA
ATCCCCCAATAAGAGCAAGAAAAGTTCCACGCCGCCGGAGACAACCATCT
ACGCCAGCAAGGATCTGGTGGGCAACTGCAAGGAGTACCGCATTGAGAAC
AACACGCGCGATCTCAGGATCATCGGCAATGGCAACCGCATACGTATTGT
GAACAACTCCGGGCAACTGCAAGTAATCGGCAATAGCACCCGACTCAAGA
TTCAGAACAATAGCGGAGCCCTCAAGTACACGGGTAACGACGGTAGGATC
TACCTGGGCAGCAGCTCCACGCAGCAGGTGGTCGACTACACGGGCTGCAA
TGGACTGCTCAAGGTGGTCAAGTCCCTGGATCTTAGCGGCGATGCCAAGA
AAAGGCCCAGCTCTCGATCGAAAAACGCCAAGCCAACGCCAACGGATGCT
GGCCAAGGCAAGTCCGGCGGCATTGAGATCGACAGCAATCTAACGATACG
GCACGGAGCCGGGAACATTGTGATCAAGAATGCCATCAACGTGAGCATCG
CAAGCTTTCTAGACCAT

FMO06565.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-RB 1846 CG15678-RB 896..1486 9..599 2895 99.3 Plus
pirk-RA 1301 CG15678-RA 351..941 9..599 2895 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21661327..21661917 599..9 2895 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 19:59:47 has no hits.

FMO06565.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:30 Download gff for FMO06565.5prime
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 344..951 1..607 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:20 Download gff for FMO06565.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 321..928 1..607 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:15 Download gff for FMO06565.5prime
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 344..951 1..607 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:15 Download gff for FMO06565.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21661317..21661924 1..607 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:30 Download gff for FMO06565.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17548822..17549429 1..607 98   Minus