FMO06566.5prime Sequence
560 bp (560 high quality bases) assembled on 2008-09-24
> FMO06566.5prime
CAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTTTAAGTTGC
CAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCGTTGGGTTT
TATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGATGATTTCG
GATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTTTGGATCAG
CAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAGGTGTGCAC
CTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCAAAGCGGCC
GACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAGGACTGGAT
CCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAGACGTTGTC
CATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGAAACGCATC
TGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGGAGGATGCC
GATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATCGCAAGCTT
TCTAGACCAT
FMO06566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7484-RB | 657 | CG7484-RB | 72..605 | 9..542 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17655214..17655593 | 163..542 | 1885 | 99.7 | Plus |
| 3L | 28110227 | 3L | 17654782..17654901 | 48..167 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 17654688..17654726 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:52 has no hits.
FMO06566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:39 Download gff for
FMO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7484-RB | 72..608 | 9..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:22 Download gff for
FMO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7484-RB | 58..594 | 9..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:12 Download gff for
FMO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7484-RB | 72..608 | 9..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:12 Download gff for
FMO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17654688..17654726 | 9..47 | 100 | -> | Plus |
| 3L | 17654782..17654900 | 48..166 | 100 | -> | Plus |
| 3L | 17655218..17655596 | 167..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:39 Download gff for
FMO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17647788..17647826 | 9..47 | 100 | -> | Plus |
| arm_3L | 17647882..17648000 | 48..166 | 100 | -> | Plus |
| arm_3L | 17648318..17648696 | 167..546 | 99 | | Plus |
