FMO06567.5prime Sequence
974 bp (974 high quality bases) assembled on 2008-09-24
> FMO06567.5prime
CAGTCGACATGAGTTTTCTGAAACCCAAGACCCACATAGAAAAGGGCGAT
GTGGTCATCCTTTATTTGAGTGTCAGTTCCATGCATGCCATCGAAGCGGT
GCCCGAAATAGTGAACAAAAAGGGCGAAACAATACCGCATATTTTTCAGA
CCAATTATGGATCGCTAAAAGTTGAAAATATCATCGGCGTGGAGTATGGT
AGTAAAGTGGAGCTCTCCAAGGGCTGGGCCCATGTCCTTCAGCCGACGCC
GGAACTCTGGACACAAACACTGCCCCACCGCACACAGATTATTTACACGC
CGGATATTAGTATGATTATCCACCAGCTGGAGGTCCGACCCGGTGCCGTG
GTGGTTGAGTCGGGCACGGGATCGGGGTCTCTATCGCATTACTTTCTAAG
AGCACTGAAACCCACTGGCCACCTGCACACCTTCGATTTCCACGAAGCTC
GAGCGGATCAGGCACGCGACGAGTTCCGGCGACATGGTATCGCTGACTTC
GTCACCGTCTATCACCGGGACGTTTGCAATCTGGGCTTTGGTGCGGAACT
GGACGGAAAGGCCGATGCGGTCTTCTTGGATCTGCCCGCGCCCGATCTCG
CTGTGCCGCACGCCTTCAAGGCGTTGAAGCTGTCCGGAGGTCGTTTCTGT
TCGTTTTCGCCCTGCATTGAGCAGTCGCAGCGCTGCATCCAAGAGCTAAC
CAAGCTGGGCTTCAACGAGATTGTTTCCTTGGAGGTGCTGCAGCAGGAGA
ACGTGGTGAAGACGCGCACGCTGCCCGTCATCGATCTTGAGTTCCTTAAA
TTGCCCAAAACCGATGAGACGACGGCGGCAACAAATGCCTTGGAGAGCAA
GGCGCCAAAGGGAGGTGAAGAAGTACCTGACCTCCAGTAATCCCCAAACC
CTGCCCGGTCACACGGGCTTCCTCACCTTCGCCACTTTGCACAAATATAC
CAAGGCCGCAAGCTTTCTAGACAT
FMO06567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14544-RB | 1031 | CG14544-RB | 71..1023 | 7..957 | 4670 | 99.6 | Plus |
| CG14544-RA | 1069 | CG14544-RA | 83..1035 | 7..957 | 4670 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26059803..26060262 | 178..637 | 2300 | 100 | Plus |
| 3R | 32079331 | 3R | 26060936..26061239 | 636..940 | 1475 | 99.7 | Plus |
| 3R | 32079331 | 3R | 26059578..26059748 | 7..177 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:55 has no hits.
FMO06567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:41 Download gff for
FMO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14544-RA | 83..1035 | 7..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:23 Download gff for
FMO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14544-RA | 71..1023 | 7..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:13 Download gff for
FMO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14544-RA | 83..1035 | 7..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:13 Download gff for
FMO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26059578..26059748 | 7..177 | 100 | -> | Plus |
| 3R | 26059803..26060261 | 178..636 | 100 | -> | Plus |
| 3R | 26060937..26061265 | 637..962 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:41 Download gff for
FMO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21885300..21885470 | 7..177 | 100 | -> | Plus |
| arm_3R | 21885525..21885983 | 178..636 | 100 | -> | Plus |
| arm_3R | 21886659..21886987 | 637..962 | 97 | -> | Plus |
