FMO06570.5prime Sequence
1204 bp (993 high quality bases) assembled on 2008-09-24
> FMO06570.5prime
CAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGGGTGTGGTA
GCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAATAAGAAGTC
CACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCGCACACTTG
TGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGGAGAATCTG
AGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAGCAGCATGT
CCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCACCATCGACA
ATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATGAGGATGTG
GGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCGCATCCCAA
GTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCTCGAGTTGG
GGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAATATCTCGGC
AATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCAAAGCACGT
GACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCATTACTCCAA
TGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGGATAAGACT
GAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATTCTACTGCG
TGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTTCAAGATCT
GGTACACAGTCGACAAGGCAACGAAGGTTGGCAGTATAGCGTTGGCTTCA
TCAATGAGGAAATGATCGCCGCCCACCTGCTTCCGGCCAAGGACGATACT
ATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGCTGCAATCCG
GCGGCTGGAAAAGCTTGGCTACCATCCGGACACCCGTTTTGCCTACGCAA
GCTTTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGGTAAGTGGTCAATT
ATAATCATATTATAATCATAATCACACTAGCCTAGAGATCCTGGTCATGA
CTATGGCTTGAATCTAACAATAAAAACTCGCGCACGACGTTCTGAACAAA
TCCGAATGGAATCTGAGTATACTGAATCTATCACGATCAGCGTTTGATTC
AATTAGCCGCCTGACTCATTCGATACTGGTGTGAATTCTATTAAGCATAT
TCTG
FMO06570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5946-RA | 1224 | CG5946-RA | 122..1060 | 9..946 | 4580 | 99.4 | Plus |
| CG5946-RF | 1460 | CG5946-RF | 371..1296 | 22..946 | 4515 | 99.4 | Plus |
| CG5946-RB | 1686 | CG5946-RB | 309..1234 | 22..946 | 4515 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11818254..11818907 | 677..24 | 3255 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11817147..11817318 | 946..775 | 735 | 97.7 | Minus |
| 3L | 28110227 | 3L | 11818094..11818189 | 771..676 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:31 has no hits.
FMO06570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:24 Download gff for
FMO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RA | 122..1063 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:48 Download gff for
FMO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RA | 115..1056 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:17 Download gff for
FMO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RA | 122..1063 | 9..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:17 Download gff for
FMO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11817144..11817316 | 777..950 | 96 | <- | Minus |
| 3L | 11818088..11818187 | 678..776 | 99 | <- | Minus |
| 3L | 11818254..11818911 | 18..677 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:24 Download gff for
FMO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11810244..11810416 | 777..950 | 96 | <- | Minus |
| arm_3L | 11811188..11811287 | 678..776 | 99 | <- | Minus |
| arm_3L | 11811354..11812011 | 18..677 | 99 | | Minus |
