FMO06571.5prime Sequence
1232 bp (917 high quality bases) assembled on 2008-09-24
> FMO06571.5prime
CAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGCGCCTGACG
GAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCCAGTTACCT
GCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTTCTGCTGCC
CCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGTTCAAGGAC
GAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCCAATGGCTA
CGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCGTTATCAGC
AGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATATCCGAGCGC
TACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAACGATCTTTA
TGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGATTGCCGGC
AGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATGTGGGCATT
GAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATCATGCATGA
CATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAAGCACATCA
AGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGGCAGAGCAG
ATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAACGGGCTCGT
CGTCGGATGTGTTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCGATCCGC
CTGTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTTGCGTGG
GTGGTGGCGACCTGCAGGACTCCTGCAAGGGCGACTCCGGCGGCCCCCTC
CAAGCAACTGCCCAGTACTTGGGCGAGTATGCGCCGAAAATGGTCGAGTT
CGGGATCGTCAGGCAGGTAGTAGTCACATGACGGGTAGATTTACCCTGCC
CGGTCTGTACACAAATGGTGGGCGAGTACGTGCAGTGAATCACGAACACC
ATGCTAGCAATGGTCTGCAAGCCTTTCTAAGAACATTCGTTTGCCGGCGC
CGGCCCAGTAAGTGTCCTAATCATAATCATAAATCATAAATCGTAATTCC
AACTAGCCTAGGAGATCTGGTCATGACTAGGTCTGGAATTCAACAATACA
AACGCCTGGCACCGAACGTTCGGAACAATCGGATGGAATCTGAGGCTATT
ACTGAACTTAACCACCGAAGTCTCAACGGCAG
FMO06571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grass-RB | 1317 | CG5896-RB | 217..1222 | 8..1017 | 4725 | 98.2 | Plus |
| grass-RA | 1391 | CG5896-RA | 291..1296 | 8..1017 | 4725 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27159265..27159671 | 592..1003 | 1660 | 96.4 | Plus |
| 3R | 32079331 | 3R | 27158630..27158845 | 134..349 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 27159008..27159201 | 398..591 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 27158238..27158364 | 8..134 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 27158903..27158951 | 349..397 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:41 has no hits.
FMO06571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:13 Download gff for
FMO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RA | 286..1300 | 1..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:49 Download gff for
FMO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 214..1228 | 1..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:03 Download gff for
FMO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RA | 286..1300 | 1..1021 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:03 Download gff for
FMO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27159265..27159690 | 592..1021 | 95 | | Plus |
| 3R | 27159008..27159201 | 398..591 | 100 | -> | Plus |
| 3R | 27158233..27158364 | 1..134 | 98 | -> | Plus |
| 3R | 27158631..27158844 | 135..348 | 100 | -> | Plus |
| 3R | 27158903..27158951 | 349..397 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:13 Download gff for
FMO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22983955..22984086 | 1..134 | 98 | -> | Plus |
| arm_3R | 22984353..22984566 | 135..348 | 100 | -> | Plus |
| arm_3R | 22984625..22984673 | 349..397 | 100 | -> | Plus |
| arm_3R | 22984730..22984923 | 398..591 | 100 | -> | Plus |
| arm_3R | 22984987..22985412 | 592..1021 | 95 | | Plus |
