FMO06573.5prime Sequence
1081 bp (989 high quality bases) assembled on 2008-09-24
> FMO06573.5prime
CAGTCGACATGAATTTTAGCCAACGCCAACCAGAATGGCACAGAATACCA
TCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAGGATCGTCG
GTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATTTCAAAAAC
GCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCGATGATCAG
TTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAACTGATAGT
AGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCGAGGACTTC
TATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTTTCCAAACC
CACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAGCACTTGTT
GGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTTAAGCCGCA
AGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGGCCCTCTCA
TACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAGGAACTGCT
GCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTATCCCATCC
TCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGCAGGTGCTC
TCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACTATCCAGGT
GCTTCCGCTGCGGAAACTTTTGATCGCAGTGCACGGCCTGATAGCGAAGA
GCATCCCGATGTGTCGGAGACGGCCTGTCCAACTTTTCGGATCACTTTTC
GAGCATTGAGTTGGGTGCTGACCCTTGTGTATGCTATGAGGCCATCGCAC
TACTGCAGCATCGTGTGCTGCGTAGCATTATGCTGTAACCATGTTGCGAC
TGCTATTCTGCGAAAAGATGAACGCCGAGCCTTGGACTGGATGTCGTTGC
ATTAAGGGAACTCCTGCGCAGCATTCACTATTGGAACGCGGCCGTAACAA
AAATCCAATCGCATGAACTCCAGTCGCCGGCTTCTTTCCTCCCAGGAATC
AATCGTATGATGGCCTGGCGCCTGCAAAACA
FMO06573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4911-RC | 4775 | CG4911-RC | 102..1175 | 9..1078 | 4790 | 97.4 | Plus |
| CG4911-RB | 2318 | CG4911-RB | 102..1175 | 9..1078 | 4790 | 97.4 | Plus |
| CG4911-RA | 2321 | CG4911-RA | 102..1175 | 9..1078 | 4790 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9070901..9071521 | 1029..413 | 2490 | 96.3 | Minus |
| 3L | 28110227 | 3L | 9071746..9071902 | 307..151 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 9072488..9072630 | 151..9 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 9071583..9071691 | 412..304 | 530 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:56 has no hits.
FMO06573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:34 Download gff for
FMO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4911-RA | 96..1176 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:29 Download gff for
FMO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4911-RA | 94..1174 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:17 Download gff for
FMO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4911-RA | 96..1176 | 1..1080 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:17 Download gff for
FMO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9070851..9071521 | 413..1080 | 95 | <- | Minus |
| 3L | 9071583..9071687 | 308..412 | 100 | <- | Minus |
| 3L | 9071746..9071901 | 152..307 | 100 | <- | Minus |
| 3L | 9072488..9072634 | 1..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:34 Download gff for
FMO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9063951..9064621 | 413..1080 | 95 | <- | Minus |
| arm_3L | 9064683..9064787 | 308..412 | 100 | <- | Minus |
| arm_3L | 9064846..9065001 | 152..307 | 100 | <- | Minus |
| arm_3L | 9065588..9065734 | 1..151 | 97 | | Minus |
