FMO06574.5prime Sequence
1216 bp (1050 high quality bases) assembled on 2008-09-24
> FMO06574.5prime
CAGTCGACATGTCCAACATAACGGCGGCGGTTATAGCCAACCGCAACAAA
AAGCATTTCCTGGGCGTCCCAGCCCCATTGGGCTATGTTGCCGGCGTCGG
TCGTGGAGCGACAGGATTCACCACTCGGTCCGATATTGGTCCTGCCCGTG
ATGCAAACGATGTATCCGACGACCGCCATGCTCCGCCGGCCACCAAACGT
AAGAAAAAAGACGAAGAGGAGGAGGAGGACGAAGACTTGAACGACTCAAA
CTATGACGAGTTTAGTGGTTACAGCGGCTCCCTGTTCTCCAAGGATCCGT
ACGACAAGGATGACGAGGAGGCGGACGCTATCTACGATTCGATAGACAAG
CGAATGGACGAAAAGCGCAAAGAGTATCGTGATCGCCGGCTGCGTGAGGA
TTTGGAGCGGTACCGCCAGGAGCGACCGAAGATCCAGCAGCAGTTCAGTG
ACCTGAAACGCTCACTGGCCAGTGTCACATCGGAGGAGTGGTCCACGATT
CCTGAAGTGGGCGACAGTCGAAACAGAAAGCAACGAAATCCAAGGGCCGA
AAAGTTTACCCCTCTGCCGGACAGCTTGATATCCAGAAATCTTGGCGGCG
AGTCGTCCTCTACGTTGGATCCGTCCTCGGGCTTGGCTTCTATGGTGCCT
GGCGTAGCTACTCCAGGCATGCTGACACCTACGGGTGATCTTGATCTGCG
AAAGATTGGCCAGGCTCGTAACACTCTTATGAACGTCAAGCTTTCGCAGG
TTTCCGATTCCGTGACAGGCCAAACGGTGGTGGATCCCAAGGGCTATCTC
ACCGACCTGCAGAGTATGATTCCCACTTATGGTGGTGACATAAACGACAT
CAAGAAGGCTCGTTTGTTGCTCAAGAGTGTGAGGGAAACGAATCCTAACC
ATCCACCAGCTTGGATTGCCTCCGCCCGTTTGGAAGAAGTGACTGGCAAG
GTTCAGATGGCGAGGAATCTGATATGCGGGGCTGCCAAATGACATCCAGT
CTGAGATCTCCTGGCTGGAAGCAGCTCGCCTTCACCGCCAGATACAGCCA
AGCGGTGATCCCCGCAGCGGCTCCGTCAATCCTACCTCGGTCAGGATCTG
GATTAAGGCCGCGGAATCTGGATCGGAACCCAAGCTTAACGTAAGGTTTC
GAAGGCCTCTGAAGTATTTTCCCATCGGTCGGCTCTGGTGAAAGCAACTT
GTGAACTCTGCAGAAA
FMO06574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 3382 | CG6841-RB | 123..1263 | 9..1143 | 5270 | 98.2 | Plus |
| CG6841-RA | 3309 | CG6841-RA | 123..1263 | 9..1143 | 5270 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18905658..18906669 | 106..1112 | 4570 | 97.9 | Plus |
| 3L | 28110227 | 3L | 18905494..18905591 | 9..106 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:25 has no hits.
FMO06574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:18 Download gff for
FMO06574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 115..1250 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:30 Download gff for
FMO06574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 113..1248 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:18 Download gff for
FMO06574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 115..1250 | 1..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:18 Download gff for
FMO06574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18905486..18905591 | 1..106 | 96 | -> | Plus |
| 3L | 18905659..18906688 | 107..1130 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:18 Download gff for
FMO06574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18898586..18898691 | 1..106 | 96 | -> | Plus |
| arm_3L | 18898759..18899788 | 107..1130 | 98 | | Plus |
