FMO06575.5prime Sequence
1034 bp (962 high quality bases) assembled on 2008-09-24
> FMO06575.5prime
CAGTCGACATGTCCAGTGCGCTGACTCGCCTGTTGGAGCGCCTGCCACTG
AAAAAACAGACGGCGCAAAGCGGTATTCGTGTTTTTTCCAACCAGGAGCA
GCGGCAAGAAATTGAGGATGATGAAGAATTCCGAGTGCTCAGCCTGCGGA
CGGTGAAGCAGCAGATGCAGAAGCGCCAGCAGGTCCGTCGGGATCCCATC
ACACCGCCGCGCACTGGCCGCATGGCGGTGGATCAGGACTGGACGGCCGT
TTGGCCAGGACCACGTTCGTTCCACCCGGCCAGTGTGCCTCTGCCACTGC
GGCAGGGATTCACGGAACGCGGAGCAGCAGCTCCGTCGAAGTTCGCCAAT
GCAGAGCTGATGAAGATACCCAACTTTCTGCACTTGACACCGCCGGCCAT
CCGTCAGCAATGCGAAGCCATCAAGAAGTTCTGCACGCCATGGCCAAAGG
GTCTGGAGACAGAGGCCAAGTGGCAGCGCCACTTCCCCCTGGAGGTCACC
ACCACAGACTACTGCCAGAGTTTGCCCACGATCAGGAATCCGGAGGCCAG
GCGCGTCACCATTACCCTGAAGCTCTCTGACCTGAAGTTCGATGCGCACG
CCAGGGATAAGTTCCTGCGCCTGGTGGGCGATCGCTACAACAAGGACACG
GACCTCGTTACCTTCGTCACGGATCGCTGTCCGCAGAAGAAGCAGAACTA
CGACTACGCCCTGTATCTGCTCACCGCTTGCTATCACGAATCCTTTGTCA
CCGAGCCGTGGGAGGCCACCAAATCGGAGGCCGACATGGAGGTCTATCTG
TTCGAGCGTACCCAGTCGAAGGTCTCCGCCGAGGGGATCCTCAACTGGAA
CGCCAAGAAGGGTGCTCCAAAAGTGGGTTCCCAGCAAGTCATTCGCTGAA
TGCGTGGAGAAACCTGAATAACGAAAGCGAAAACGAGTACAACTTGGGGC
AAATACAGGAAGAGGTCTCAGAAGAATGTTTGAACATGCCGCCAAGCTTT
CTAGAACATTTCGTTTGGCGCCGCGGTCCCAGTA
FMO06575.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS35-RA | 1144 | CG2101-RA | 114..1088 | 8..987 | 4625 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2781192..2782013 | 125..948 | 3945 | 99.2 | Plus |
| 3L | 28110227 | 3L | 2781012..2781130 | 8..126 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:49 has no hits.
FMO06575.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:02 Download gff for
FMO06575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 114..1088 | 8..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:31 Download gff for
FMO06575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 92..1066 | 8..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:25 Download gff for
FMO06575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 114..1088 | 8..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:25 Download gff for
FMO06575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2781012..2781130 | 8..126 | 100 | -> | Plus |
| 3L | 2781194..2782029 | 127..964 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:02 Download gff for
FMO06575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2781012..2781130 | 8..126 | 100 | -> | Plus |
| arm_3L | 2781194..2782029 | 127..964 | 98 | -> | Plus |
