FMO06576.5prime Sequence
1250 bp (973 high quality bases) assembled on 2008-09-24
> FMO06576.5prime
CAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAGCTCCTCCA
ACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGCAAGATATC
CGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAAGACCATCG
GCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTGTGACCAAG
ACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAACGAGGAGTA
CCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCTGCGGCATC
CACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGATGATCTAT
CTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCATCTGGTGGC
CAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCACCCAACTCG
TCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATCGCGATCTC
AAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAGCTTGCCGA
CTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAAAACTTGGT
GTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCTTGGAATAC
GATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTGTACGCCTT
GGTTTGTGGAGCATTACCTTTCGATGGAAAGACTATCCTGGAACTGAAAA
GTCGCGTGGTGTTGGGCAATTTCGCATTCCCTTTCTTTATGTCGCAAGAA
TGCGAGCAGCTAATACGGAACATGCTGGTGGTGGAGCCTGATCGGCGAAA
CACTATCAAACAAAATCATAAGCACCCGCTGGCTCGCGAGTGCAGTCAAA
ATGCAGGAAGCAGGAACGTTTCGGTGACATGTCTCCGGCTCGGGAACAGT
GTCCAAATCGGCCGTCCACATCCTCCGTGGGAAGATGGCGTCGAAATTCA
CCGCCGCCACTGAACTCTGGGTAATGACGCATATAGCTCCAATTGCCCGG
ACTGACCGCCGACATGAATAGACAGTCGGTGCACGAAGCAAAAAATTCCA
CACATCCTACGCCTATTTACACCTGCGTGCATGAACAGCTTGCGACAAAG
CGAGCGGAAACCAGAAAATGCACCACGACCAGCTACCATATCCGAATACG
TTAACAAGATCCTCCATCGGCCGTGATGAGATATGCTTCTAGAACAACCT
FMO06576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sik3-RF | 6011 | CG42856-RF | 862..2025 | 9..1176 | 4900 | 95.9 | Plus |
| Sik3-RE | 6020 | CG42856-RE | 862..2025 | 9..1176 | 4900 | 95.9 | Plus |
| Sik3-RD | 6278 | CG42856-RD | 862..2025 | 9..1176 | 4900 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18699303..18699640 | 205..542 | 1690 | 100 | Plus |
| 2R | 25286936 | 2R | 18699702..18699959 | 541..798 | 1195 | 99.2 | Plus |
| 2R | 25286936 | 2R | 18692665..18692865 | 9..209 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 18700017..18700304 | 797..1086 | 640 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:20 has no hits.
FMO06576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:58 Download gff for
FMO06576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sik3-RB | 201..1301 | 1..1102 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:33 Download gff for
FMO06576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15072-RC | 639..1739 | 1..1102 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:36 Download gff for
FMO06576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sik3-RD | 851..1951 | 1..1102 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:36 Download gff for
FMO06576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18692654..18692862 | 1..206 | 98 | -> | Plus |
| 2R | 18699305..18699640 | 207..542 | 100 | -> | Plus |
| 2R | 18699704..18699959 | 543..798 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:58 Download gff for
FMO06576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14580159..14580367 | 1..206 | 98 | -> | Plus |
| arm_2R | 14586810..14587145 | 207..542 | 100 | -> | Plus |
| arm_2R | 14587209..14587464 | 543..798 | 99 | -> | Plus |
