FMO06577.5prime Sequence
1227 bp (1024 high quality bases) assembled on 2008-09-24
> FMO06577.5prime
CAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCGTTTCCTGC
GCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAAGTCTCACC
ATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGGTGGAGTTC
AACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATATGCAGGAA
CTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGCTCCAAGCA
CCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTTCGATTTTA
CCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGGAACCACTT
AACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAAAAGATACT
CACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCACGGCCGCCT
GTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCCTATCCGAG
GATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCGTATTGGAA
CAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCACTTGGCCGG
ATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCATTTTGGCC
AAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGACGTCAGCAT
CCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCACAGGAACCG
TGCAGTCCAACAATTTCCCCGCCAACAAGAAGTATCTGCTGGCCTTCAAA
GGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAACTCGCTTTT
TCATTTGCACAACGGACGCGACATGGTCCTGGTCACCACCTGTCGCCACG
GGAAAAGTTGGCGGGAAGCTGCAGGATAATCGCTGCGACGAAGGACAACC
GGGAATTACGACAGATACGACTACGAGAACCTTACTGCAAATTTCACTTT
CTGCTTGTTGCCGCGCGACGTCGTTTGGGTTCCTTAGATTCCTCGAAGCT
TGCAGCTGTTGCAATTCCCGTACTATTGTCAATGCCTGGGTGTTGCCGTT
TGAATCGAAAATCGATTGAAGCAGCGCAATTGGACGATGAGCGCCCCTGG
CTCAGTACCGATCTTGCCTCATACCGGCGAAGTACTTTGCCTTCGCGACA
AGAACACCAGGTCTCGGTGTGGGAAAC
FMO06577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttv-RB | 6899 | CG10117-RB | 926..2067 | 9..1143 | 5255 | 98.1 | Plus |
| ttv-RA | 3994 | CG10117-RA | 617..1758 | 9..1143 | 5255 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14527192..14527998 | 9..815 | 4005 | 99.8 | Plus |
| 2R | 25286936 | 2R | 14552911..14553057 | 808..956 | 630 | 98 | Plus |
| 2R | 25286936 | 2R | 14563287..14563342 | 1064..1118 | 230 | 98.2 | Plus |
| 2R | 25286936 | 2R | 14563008..14563082 | 962..1035 | 200 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:58 has no hits.
FMO06577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:42 Download gff for
FMO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttv-RA | 611..1744 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:13 Download gff for
FMO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttv-RA | 616..1749 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:11 Download gff for
FMO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttv-RA | 611..1744 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:11 Download gff for
FMO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14527186..14527991 | 1..808 | 99 | -> | Plus |
| 2R | 14552912..14553064 | 809..964 | 97 | -> | Plus |
| 2R | 14563011..14563085 | 965..1037 | 92 | -> | Plus |
| 2R | 14563259..14563342 | 1038..1118 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:42 Download gff for
FMO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10414691..10415496 | 1..808 | 99 | -> | Plus |
| arm_2R | 10440417..10440569 | 809..964 | 97 | -> | Plus |
| arm_2R | 10450516..10450590 | 965..1037 | 92 | -> | Plus |
| arm_2R | 10450764..10450847 | 1038..1118 | 94 | == | Plus |
