FMO06578.5prime Sequence
1241 bp (953 high quality bases) assembled on 2008-09-24
> FMO06578.5prime
CAGTCGACATGATGATTCAAGAGCCCGTGCAGGCCGCCATATGGCATTGC
CTGAACTACTACGACTTCAAGGATGCCGTTTTCCTGTCGGAACGCCTGTG
CTCAGAAGTGGAGAGCGACGAGACGATATTCCTGCTGGCCACCAGCTACT
TCCGCTCCAATCAGGTGCACCAGGCATATTGGCTGCTCAAGGAGAAGGCA
CGCCGCTCGCCGCAGTGCCGCTTTCTGCAGGCCAAATGTGCCTACGAGCT
GAAAAAATACGCTGAGGCGGAGAGTGCCCTGATCTCCACGGGATTCGCGG
ACGCCAAGAACTGCGATGAGCTGCAGCGGGACTTCGGGGATCTGGCCTGC
TTCGCCTATCAGCTAATGGCCCAGATCTGCATGAGGACCGAGCGCAATAA
ACTGGCCGTTAGTGCTTTAAGGCGCGCCCTCAAACTGAACCCCTTCATGT
GGCACGCATTCGCGGATCTGTGCCTGCTGGGCCAGGATACAGATGCGGCG
GCCATATTCCAAATCCACAGCACAGATGTGTTCAATACCTGCCAGGGCAG
CAGCGTAAATGCCAATGCAATGGTGCTGTTCGGAGCCGAGCAGCAGGGTC
AACAGCATCAGGAGCGCCAGTCGCTGATCACTAAACCTAAGCAATGTCTC
CAACTACATTCTGACCACGCCCGTGGATCAGCAGCAACAACAGATCAACC
AGAATCAGAACCAGCACCACAACAGCAACATGGTGACGCCCATCAACAAT
AATAATAATAAACAACAATCTCAATAGTTCGATCAGCATGCTGCGCGGGG
GTTGGTACAAAACTCCAGCATGCTGGCGATGCTGGAGGACACACCTATGG
GAGCTCCGCAGGACCCGGCCGGCCAGTATCAGCAGAACCAGCAGCCTCTA
CGACATGAGCAGCGGTACTCCGTTTCGCAACAGTTCAAATTACTATCGGC
CATCTCCACCGCCAACACGGAGCTTCGGCATCATGCCTTTACTAATCCGG
GCACCGGGAACGATGGATCCTTCTTTGGCAACCCACCGTCCGGTTTGAAT
ATAACCTATCCCGATGCCCCAAAGGTTGGTGCAGGTCCACCAGAACCCGA
AAATAGTGGCCAAAGCCTAAGAACCATGTGGGGCGGAACTACATCACTGC
GAAAGGAGGCAAGCCTTATAACCGCCGCTTACCAGCCGAAACATAGCCCC
GCCATCTCCAACAAAATATGTGGGCCACAGTGGGCTGTAGT
FMO06578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc27-RB | 3713 | CG8610-RB | 657..1894 | 6..1233 | 4950 | 94.6 | Plus |
| Cdc27-RA | 3438 | CG8610-RA | 657..1894 | 6..1233 | 4950 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7247428..7248436 | 1114..107 | 4230 | 96.3 | Minus |
| 3L | 28110227 | 3L | 7248504..7248581 | 108..31 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1071..1153 | 680..761 | 142 | 65.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3295..3394 | 677..776 | 130 | 64.1 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 3710..3754 | 730..773 | 123 | 77.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1111..1165 | 675..728 | 119 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1589 | 679..728 | 117 | 72.5 | Plus |
FMO06578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:11 Download gff for
FMO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 655..1704 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:36 Download gff for
FMO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 654..1703 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:32 Download gff for
FMO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 655..1704 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:32 Download gff for
FMO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7247511..7248434 | 109..1033 | 98 | <- | Minus |
| 3L | 7248504..7248579 | 33..108 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:11 Download gff for
FMO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7240611..7241534 | 109..1033 | 98 | <- | Minus |
| arm_3L | 7241604..7241679 | 33..108 | 100 | <- | Minus |
