FMO06579.5prime Sequence
1211 bp (1025 high quality bases) assembled on 2008-09-24
> FMO06579.5prime
CAGTCGACATGTCCAAGGCCAAGGGTAAGAAGAAGGAGCGCTTTGATGAC
GACGAGGAGCAGCTGGAGAAAGTGCAGGAGAAGAAGCCACCGACAAGCAA
GAAGGGTGGTAAGAAGGGAAAGCGAGGAGGTGGCGGCGGCGACTCCAGCG
ACGAGGATGTCACGACCAGGAATCGGGACAACGAGGATCTGGAGAGCATA
GCCTCATCGAATCAGAGCAAACAGCAGACTGCCGGCAAAAAGCAGGCCAA
GAAGGGTAAAAAGGGCAAGAGGAATAATGACTGGAGCGACGAGGATGAGA
AGCCAGAGAAGAGTTTGCCTGCCAACGACTTGGACGATGAAGATGACGAC
GAGGCGCCTCTGGCATCCAAGCCAGCTGCTAAAAAGCCACAGCCCAGCAA
AAAGAACAAGAAGAACAAGAAGAAGAACGACGATTTCTCGGACGAAGATA
AACCGGAGCTGGACTTGGACGACCTGGACAATGAGGAGGATGAGGTGGAA
GTGGTTGCTGTCAAGCCAGCCTCCAAGAAGTCCAAGAAGAAGCAGCAGGC
TCAGCAAAAGAACATGTTCGCCATGAGCGATGATGAGGAGGATGAGGTTG
CCGATGATCTGCCAAATGACAGCGAAGAGGAGGAGAAGGAACAGCTGTCC
AACAAGGCGGCCAAGGAGTCAAAAAAGGAACAGCAGAAGCAGCCCGAAAA
GGAAGTGGAGGAGCAGAAAGTGGAGCAAGTCCTTAGCGAAAAAGTGGCGG
CAGTAAGTCTCAAGGAAAAGACACCTGAGCCGGTACCCAAGGCCGAGCCC
GAACCCGAGTCTGAACCCCAACCCGACGAGGAAGCCGATGCTGAGGTAGA
TTCCAAGTTCGAGGAGAGCAAGGAAGCCAAGGAGAAGAACTCACTCACAG
GAGAAAAGAGGCAAAGGAGGCAGCAGAGTACGACGCCAATGGAGCTGATG
ACAAAGAAGGTGGTGCCGGTCACTCGGACTGGACACATTTCACCATGTTC
GCAGGTGCAGAAGACGCTGGTCAAAGGCGGCTCTGGAGCAGCTTGATATC
AGATCGAGATTCCCCATCTCAGCAGGTACGATCATTTTGGACGCCCACCT
TTGATGCCATGACGCGTAGGATGGGTGTCACGACGGCAGACACTGCTCGG
CATTGGCACCGTCCTTTGGACCCATATATCACGCGCCCAAATATATCCGA
GTGTGGCTGGC
FMO06579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1703-RB | 3059 | CG1703-RB | 179..1262 | 7..1073 | 4895 | 97.8 | Plus |
| CG1703-RA | 2970 | CG1703-RA | 90..1173 | 7..1073 | 4895 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11612175..11613220 | 6..1040 | 4560 | 98.4 | Plus |
Blast to na_te.dros performed 2014-11-28 22:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1179 | 650..769 | 120 | 58.5 | Plus |
FMO06579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:07 Download gff for
FMO06579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 82..1148 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:37 Download gff for
FMO06579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 81..1147 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:26 Download gff for
FMO06579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1703-RA | 82..1148 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:26 Download gff for
FMO06579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11612171..11613264 | 1..1075 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:07 Download gff for
FMO06579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11506204..11507297 | 1..1075 | 97 | -> | Plus |
