FMO06580.5prime Sequence
1227 bp (1028 high quality bases) assembled on 2008-09-24
> FMO06580.5prime
CAGTCGACATGGATATACAACAACTGGAGGTGCTGTGCAAGCAACTCTAC
GAAGCCACAGACATCAGAATTCGTTCCGAGGCGGAAAAAGCCCTAGTCAC
ATTCGTAAGCAGCCAGGATGCGCTGCCCAAATGCCAGTTGCTGCTGCAAA
GAGCCGATTCCAGCTACGCCCAGTTGCTGGCCGCTTCCACACTTACCAAA
CTCATTCAGGGATTGAGTCTACAGGAGCGGATCGACATTCGCAGCTATGC
CCTCAACTATCTGGCCACTGTGCCGAATCTGCAGCACTTCGTTGTCCAGG
CATTGGTCAGTCTGCTGGCGAAGCTCACAAAGTACGGATGGTTCGATTCG
TACAAGGAGGAAATGGTCTTCCAAAACCTCTTGGAAGATGTCAAGAAGTT
CTTGCAGGGCTCCGTTGAGCACTGCACCATTGGCGTCCAAATTCTATCAC
AACTGGTGTGTGAGATGAACTCAGTTGTCGAGATGGACGTGCAGGTGTCC
TTTTCCAAAATGCGCAAAATAGCCACATCTTTTCGGGACCAGCAACTCCT
AGAAACCTTTTTGCTATCCTGCTCTCTACTGGTCTCGGCCCGTGATAACA
GCAAAAACATAAGCTTCATGGATGAGTCGCAGCAAGCGTTAATATCACAC
GTCTTACGTTTAACGAAGAATTGTCTGAGCTTCGACTTCATTGGCAGTTC
GACAGATGAATCTGCTGATGATATGAACAACGTTCAGATACCCACAGCTT
GGCGTCCTGCATTCTTAGATTCGAACACACTTAAACTCTTTTTTGATTTA
TATCAAATTTTGCCCAATGGTTTAGCTAGCTACTCCATATCCTGCCTGGT
TCAAATTACATCTGTGCGTCGCTCACTTTTTAATAATTCTGAAAGAACAA
AATTTCTAACGCACTTGGTCGAAGGAGTCAAGATATTTTAACACCTCTGC
AGGCTTGAGTGACCAAGATACTATCCACGAGTTCTGCCGTTGCTGGCCTC
GCCTTTAGTCTATTATCATTGGGTGACCTAATAGCGGTGCATGTTATCCA
GAGCATCACTGAATACTAGTTACTGTTGAATCCTGCACCTATGGCTTTGC
ACCGAACAGTGTACATACCTACTCACCCTTGCACGGTATGGTGCGCCTGT
ACCATGGTTAGTGCCGGATCGCAATTGCTAGACCTTCACCGCCGGAGGAT
TATAAGGCGTATTATGTAATCTCGCCC
FMO06580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp16-RF | 3755 | CG33180-RF | 73..1299 | 9..1212 | 5180 | 96.3 | Plus |
| Ranbp16-RE | 3950 | CG33180-RE | 73..1299 | 9..1212 | 5180 | 96.3 | Plus |
| Ranbp16-RC | 3683 | CG33180-RC | 73..1299 | 9..1212 | 5180 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15933142..15933539 | 408..11 | 1990 | 100 | Minus |
| X | 23542271 | X | 15932848..15933081 | 639..406 | 1170 | 100 | Minus |
| X | 23542271 | X | 15932247..15932463 | 951..736 | 1020 | 99.1 | Minus |
| X | 23542271 | X | 15932522..15932621 | 737..638 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:03 has no hits.
FMO06580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:44 Download gff for
FMO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RC | 49..1185 | 9..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:38 Download gff for
FMO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RB | 52..1188 | 9..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:15 Download gff for
FMO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RC | 73..1209 | 9..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:15 Download gff for
FMO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15931942..15931986 | 1089..1130 | 91 | <- | Minus |
| X | 15932044..15932190 | 952..1088 | 86 | <- | Minus |
| X | 15932246..15932461 | 738..951 | 98 | <- | Minus |
| X | 15932522..15932621 | 638..737 | 100 | <- | Minus |
| X | 15932850..15933079 | 408..637 | 100 | <- | Minus |
| X | 15933143..15933547 | 1..407 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:44 Download gff for
FMO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15826883..15827112 | 408..637 | 100 | <- | Minus |
| arm_X | 15826279..15826494 | 738..951 | 98 | <- | Minus |
| arm_X | 15826555..15826654 | 638..737 | 100 | <- | Minus |
| arm_X | 15825975..15826019 | 1089..1130 | 91 | <- | Minus |
| arm_X | 15826077..15826223 | 952..1088 | 86 | <- | Minus |
| arm_X | 15827176..15827580 | 1..407 | 99 | | Minus |
