FMO06582.5prime Sequence
1227 bp (1047 high quality bases) assembled on 2008-09-24
> FMO06582.5prime
CAGTCGAACATGTCGGACTATAGATCGCAATCGCGCAGTGGCGGGGGGCG
TGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCGCGTCTCT
TCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGAAGCCTTC
TCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACAAGCACAC
CCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACATCCGATG
CTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAAGATGGAT
CGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCTCAAATAA
GTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTGATCCCCA
AAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTGGGGCGAT
GTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATCCCAAGGG
CTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTGGCTTTCG
AAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAAGGGTTCT
ACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACAATCCCTT
GTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGCGGTAGCA
GCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAATGTATCG
CAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGCCAGTGGC
CCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGTCAACAAGGATC
AGCTCTGGCGTCTCTTCGACATAATTTCCCGGCTTGGATTACTGCCAAAT
CATGCGCGAAACATGGACCGCGCACCAATGAGGCCTTAGTGGTGGTACGA
CAACCCAGAAGCCGCCATTTATGCCAAGGACAAACTTCATGGCCTGAGTA
CCCAATGGCGACGCATCATTTGTCAAAGTCAATGGAATGGAGCTCAGCTC
GCATGACAATCCCTTCATAGAAAAACCGAACCCAAAAGGATGCCATCTGC
AATGTTTCCCTTGCCTCAACTTAGCCACTTGCACGCCGGACGAACGAGGT
GCCAACGACGTTCATGTGCTTCTCAGCGACTTGGCCGATTAATTGAAAAC
ATTCTCCTCTGTGCGTGGCTCCGGACG
FMO06582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-RA | 2222 | CG1316-RA | 113..1284 | 9..1179 | 5260 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4284605..4284989 | 525..910 | 1865 | 99.5 | Plus |
3L | 28110227 | 3L | 4283963..4284283 | 9..329 | 1590 | 99.7 | Plus |
3L | 28110227 | 3L | 4284343..4284543 | 326..526 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 4285053..4285117 | 913..978 | 280 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-28 22:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 660..742 | 132 | 63.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 697..738 | 120 | 76.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 692..738 | 118 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 696..743 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 684..735 | 113 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2407 | 697..763 | 110 | 62.7 | Plus |
FMO06582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:45 Download gff for
FMO06582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 99..1249 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:31 Download gff for
FMO06582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 103..1253 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:03 Download gff for
FMO06582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 103..1253 | 1..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:03 Download gff for
FMO06582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4283953..4284283 | 1..329 | 98 | -> | Plus |
3L | 4284347..4284541 | 330..524 | 100 | -> | Plus |
3L | 4284605..4284990 | 525..912 | 99 | -> | Plus |
3L | 4285053..4285116 | 913..977 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:31 Download gff for
FMO06582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4283953..4284283 | 1..329 | 98 | -> | Plus |
arm_3L | 4284347..4284541 | 330..524 | 100 | -> | Plus |
arm_3L | 4284605..4284990 | 525..912 | 99 | -> | Plus |
arm_3L | 4285053..4285116 | 913..977 | 98 | -> | Plus |