Clone FMO06582 Report

Search the DGRC for FMO06582

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:65
Well:82
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1316-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06582.5prime Sequence

1227 bp (1047 high quality bases) assembled on 2008-09-24

> FMO06582.5prime
CAGTCGAACATGTCGGACTATAGATCGCAATCGCGCAGTGGCGGGGGGCG
TGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCGCGTCTCT
TCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGAAGCCTTC
TCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACAAGCACAC
CCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACATCCGATG
CTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAAGATGGAT
CGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCTCAAATAA
GTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTGATCCCCA
AAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTGGGGCGAT
GTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATCCCAAGGG
CTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTGGCTTTCG
AAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAAGGGTTCT
ACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACAATCCCTT
GTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGCGGTAGCA
GCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAATGTATCG
CAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGCCAGTGGC
CCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGTCAACAAGGATC
AGCTCTGGCGTCTCTTCGACATAATTTCCCGGCTTGGATTACTGCCAAAT
CATGCGCGAAACATGGACCGCGCACCAATGAGGCCTTAGTGGTGGTACGA
CAACCCAGAAGCCGCCATTTATGCCAAGGACAAACTTCATGGCCTGAGTA
CCCAATGGCGACGCATCATTTGTCAAAGTCAATGGAATGGAGCTCAGCTC
GCATGACAATCCCTTCATAGAAAAACCGAACCCAAAAGGATGCCATCTGC
AATGTTTCCCTTGCCTCAACTTAGCCACTTGCACGCCGGACGAACGAGGT
GCCAACGACGTTCATGTGCTTCTCAGCGACTTGGCCGATTAATTGAAAAC
ATTCTCCTCTGTGCGTGGCTCCGGACG

FMO06582.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-RA 2222 CG1316-RA 113..1284 9..1179 5260 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4284605..4284989 525..910 1865 99.5 Plus
3L 28110227 3L 4283963..4284283 9..329 1590 99.7 Plus
3L 28110227 3L 4284343..4284543 326..526 990 99.5 Plus
3L 28110227 3L 4285053..4285117 913..978 280 98.5 Plus
Blast to na_te.dros performed 2014-11-28 22:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6696..6780 660..742 132 63.5 Plus
roo 9092 roo DM_ROO 9092bp 1116..1157 697..738 120 76.2 Plus
roo 9092 roo DM_ROO 9092bp 1105..1151 692..738 118 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6766 696..743 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2346 684..735 113 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2407 697..763 110 62.7 Plus

FMO06582.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:45 Download gff for FMO06582.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 99..1249 1..1151 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:31 Download gff for FMO06582.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 103..1253 1..1151 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:03 Download gff for FMO06582.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 103..1253 1..1151 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:03 Download gff for FMO06582.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4283953..4284283 1..329 98 -> Plus
3L 4284347..4284541 330..524 100 -> Plus
3L 4284605..4284990 525..912 99 -> Plus
3L 4285053..4285116 913..977 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:31 Download gff for FMO06582.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4283953..4284283 1..329 98 -> Plus
arm_3L 4284347..4284541 330..524 100 -> Plus
arm_3L 4284605..4284990 525..912 99 -> Plus
arm_3L 4285053..4285116 913..977 98 -> Plus