FMO06584.5prime Sequence
880 bp (880 high quality bases) assembled on 2008-09-24
> FMO06584.5prime
CAGTCGACATGCGAAAGACCCGCTCTCAGACGGCTCGCACGCAGGCGGAA
AATGCCGCAACATCTTCGAGCCCCGGGCACCAGTCGACTTCGTCAGCGCC
AATAGCAGTTAATCCCTTTGATTCCACCAAGTACAAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTTCTACTTCACGCTCACGCCGCAGCAGGC
CACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGC
ACGCCATTTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTTCGTGCG
ACCAGGAGGACTGCTTCCCGCCGAACGTAACGTCAAAGTGAACAACAAAC
TCTGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCA
AGCGTCCGCCGGCGACCCGTTTATTGTCAC
FMO06584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-RM | 2149 | CG8068-RM | 202..1070 | 9..880 | 4180 | 99.1 | Plus |
| Su(var)2-10-RN | 2414 | CG8068-RN | 202..1070 | 9..880 | 4180 | 99.1 | Plus |
| Su(var)2-10-RL | 2150 | CG8068-RL | 202..1070 | 9..880 | 4180 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9117176..9117852 | 136..814 | 3200 | 99.4 | Plus |
| 2R | 25286936 | 2R | 9116323..9116457 | 9..143 | 660 | 99.3 | Plus |
| 2R | 25286936 | 2R | 9117917..9117964 | 815..861 | 190 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:43 has no hits.
FMO06584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:09 Download gff for
FMO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RI | 197..1070 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:27 Download gff for
FMO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RI | 193..1066 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:05 Download gff for
FMO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RL | 197..1070 | 1..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:05 Download gff for
FMO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9116318..9116451 | 1..137 | 97 | -> | Plus |
| 2R | 9117178..9117852 | 138..814 | 99 | -> | Plus |
| 2R | 9117917..9117981 | 815..880 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:09 Download gff for
FMO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5003823..5003956 | 1..137 | 97 | -> | Plus |
| arm_2R | 5004683..5005357 | 138..814 | 99 | -> | Plus |
| arm_2R | 5005422..5005486 | 815..880 | 94 | | Plus |
