FMO06601.5prime Sequence
269 bp (-60 high quality bases) assembled on 2008-10-01
> FMO06601.5prime
GACTACGAGAGCGCAACGAGTGCATGGAGGGCGTGTGCAAGATCTACGAG
GAGCACCTGAAGCGCCGCAATCCAAACACTCCGACCATTACGTATGACAT
TAGCCAGCTATTCGATTTCATCGACACAATGGTGGACATTAGCTGCATGG
TTTACCAAAAGAGCACCAATACCTATGCGCCCTACAATAAGGATTGGATC
AAGGAGAAGATCTATGTGCTGCTCCGTCAGGCGGCATTTAGTTCCAATAC
CGCAAGCTTTCTAGACCAT
FMO06601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e(r)-RE | 1332 | CG1871-RE | 373..624 | 1..251 | 1220 | 99.2 | Plus |
| e(r)-RD | 1191 | CG1871-RD | 232..483 | 1..251 | 1220 | 99.2 | Plus |
| e(r)-RC | 1199 | CG1871-RC | 240..491 | 1..251 | 1220 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8905067..8905318 | 251..1 | 1195 | 99.2 | Minus |
Blast to na_te.dros performed 2014-11-28 19:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 1581..1634 | 94..147 | 99 | 64.8 | Plus |
FMO06601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:53 Download gff for
FMO06601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 240..496 | 1..256 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:52 Download gff for
FMO06601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RA | 287..543 | 1..256 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:31 Download gff for
FMO06601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 240..496 | 1..256 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:31 Download gff for
FMO06601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8905062..8905318 | 1..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:53 Download gff for
FMO06601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8799095..8799351 | 1..256 | 98 | | Minus |
