FMO06603.5prime Sequence
653 bp (653 high quality bases) assembled on 2008-09-29
> FMO06603.5prime
CAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGGAGATCGTG
AGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCCGAAGACTT
GTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAAGTACAACC
AGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCGCCTCGGCC
AATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATACAGGTGGA
CGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGATTGCCATTG
TCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGCAAAAACTT
GACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATCAAGCCGCA
GCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTACGTAAAGG
CCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACCAGCTGTCC
AAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGGCTGCAGCC
GGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCACTTTCCTGC
AGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCCTGGAGAGAGCA
CAA
FMO06603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-RB | 1028 | CG7864-RB | 47..694 | 5..653 | 3205 | 99.7 | Plus |
| Pex10-RA | 1487 | CG7864-RA | 506..1153 | 5..653 | 3205 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1559158..1559529 | 281..653 | 1815 | 99.7 | Plus |
| 3L | 28110227 | 3L | 1558828..1559104 | 5..281 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:58 has no hits.
FMO06603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:44 Download gff for
FMO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1151 | 1..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:26:47 Download gff for
FMO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-RA | 496..1144 | 1..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:15 Download gff for
FMO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1151 | 1..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:15 Download gff for
FMO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1558825..1559104 | 1..281 | 98 | -> | Plus |
| 3L | 1559159..1559527 | 282..651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:44 Download gff for
FMO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1558825..1559104 | 1..281 | 98 | -> | Plus |
| arm_3L | 1559159..1559527 | 282..651 | 99 | | Plus |
