FMO06607.5prime Sequence
1141 bp (911 high quality bases) assembled on 2008-10-01
> FMO06607.5prime
AATTAAACAAAGTTATCAGTCGACATGGCCGCAAACTACGGCCTCTCGAC
GGCAGCTCTGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGC
ACAAGGACCAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACG
AACACCGGCCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCAT
TGTAAACGAGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACG
TGGGCAGCGAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCT
CACTTCACCCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCA
AGTGGCTGGCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGC
AGTGGCGCGATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGT
CAGAAACAGTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGC
TCGACTCTATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCA
ACCGGGCATCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTT
CTATATAAAAGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTA
TCGAGGCCGCCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGAC
CAAGGCGAGAGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCT
CGCCTCTGCCGGACAGCAGCGTTCCCGCATGCTGGGCACTCTGTTCAAGG
ATGAACGCTGTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTAC
TTGGGAGCGCATCATTCGGCGCTCCAAGCTACAGGAATTCGAGGCCCTGC
TGCAGGACCACCAAAAGCTGCCACCTCCGAATGGATCCTCGATCTTGAAT
CGGGCTGTTTCGACCAATCTTGTTGTCGGCTAGTAAGCTGTACAACACCT
AACTTTTGAGGAACTAGGCGGCTTCTGTCGGACTTACCCGCGGTGAAGCG
AAGAAAATGGCCTCTCAAATGATTACCGAAAGGCGCATGAACCGGACACA
TCACCAATTCTGGCCATTGTGGCCCTTCCGAGAACGGGAAC
FMO06607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-RB | 1466 | CG8725-RB | 42..1158 | 25..1141 | 4880 | 96.6 | Plus |
| CSN4-RA | 1703 | CG8725-RA | 279..1395 | 25..1141 | 4880 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7972616..7973190 | 25..599 | 2860 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7973246..7973742 | 596..1092 | 1730 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:46 has no hits.
FMO06607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:11 Download gff for
FMO06607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 268..1382 | 14..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:46 Download gff for
FMO06607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 268..1382 | 14..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:57 Download gff for
FMO06607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 268..1382 | 14..1128 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:57 Download gff for
FMO06607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7972605..7973188 | 14..597 | 98 | -> | Plus |
| 2R | 7973248..7973778 | 598..1128 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:11 Download gff for
FMO06607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3860110..3860693 | 14..597 | 98 | -> | Plus |
| arm_2R | 3860753..3861283 | 598..1128 | 93 | | Plus |
