FMO06609.5prime Sequence
467 bp (467 high quality bases) assembled on 2008-09-29
> FMO06609.5prime
CAGTCGACATGGCGTTAAAAAGAATCAATAAGGAACTGCAAGATCTGGGC
AGAGATCCACCTGCACAATGTTCAGCCGGTCCAGTTGGAGATGATTTATT
TCACTGGCAAGCTACAATAATGGGCCCGCCGGACAGCCCTTATCAAGGAG
GTGTATTCTTCTTAACTATACATTTTCCAACAGACTATCCCTTTAAACCA
CCCAAAGTGGCTTTTACAACGCGCATATACCATCCAAACATCAACAGCAA
TGGATCGATTTGTCTCGATATATTAAGATCTCAGTGGTCGCCAGCATTAA
CTATTTCAAAAGTTTTATTATCAATTTGCTCTCTACTCTGTGATCCCAAT
CCAGACGATCCTCTTGTTCCAGAGATTGCCAGAATATATAAAACCGATCG
GGAAAAATACAATGAGCTGGCACGAGAGTGGACTAGAAAGTATGCTATGG
CAAGCTTTCTAGACCAT
FMO06609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eff-RC | 1913 | CG7425-RC | 389..829 | 9..449 | 2205 | 100 | Plus |
| eff-RB | 1622 | CG7425-RB | 389..829 | 9..449 | 2205 | 100 | Plus |
| eff-RA | 2084 | CG7425-RA | 851..1291 | 9..449 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14733700..14733884 | 312..128 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 14733498..14733636 | 449..311 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 14737420..14737485 | 96..31 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:01 has no hits.
FMO06609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:46 Download gff for
FMO06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eff-RA | 841..1301 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:26:53 Download gff for
FMO06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eff-RA | 733..1193 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:16 Download gff for
FMO06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eff-RA | 841..1301 | 1..459 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:16 Download gff for
FMO06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14733488..14733634 | 313..459 | 97 | <- | Minus |
| 3R | 14733700..14733883 | 129..312 | 100 | <- | Minus |
| 3R | 14734387..14734418 | 97..128 | 100 | <- | Minus |
| 3R | 14737420..14737483 | 33..96 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:46 Download gff for
FMO06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10559210..10559356 | 313..459 | 97 | <- | Minus |
| arm_3R | 10559422..10559605 | 129..312 | 100 | <- | Minus |
| arm_3R | 10560109..10560140 | 97..128 | 100 | <- | Minus |
| arm_3R | 10563142..10563205 | 33..96 | 100 | <- | Minus |
