FMO06612.5prime Sequence
1133 bp (821 high quality bases) assembled on 2008-09-29
> FMO06612.5prime
CAGTCGACATGTTCGTCAACTCCATGACGTTCCGCGGCAATCCGGCGAAC
TACCACCAGCAGCAGCCGGCCCTGAACCACCACACGCTGGCAGCGGCGCA
CCACCAGCAGCAGCTGCACCACCACGCCGCTGCAGCTGGTCACCTGAGCC
ACGTCGGCGGTGGGCACGCAGCCAGTAACCACCTGGCGGCCGCCGCTGTT
CTCGGACGGCATGGCCACAACTCCCTGGGCAGCGGGCACACGTCCACGTC
CTCGCACTCGGCCAATGTGGGCGTGGGAGTCGGCGGGGGAGCTCTGGCTA
GCGGCTCCACTGGGGGCAGCGGAGGCAACAGCTCTCCGGACAGTGGCAAG
ATCTATATCAAGAACCTGGAGCGGTCCATCGACAACAAGGCGGTGTACGA
CACGTTCTCGGTGTTCGGAAACATCCTAAACTGCAATGTGGCCAAAGACG
AGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATTCGGAGGAG
GCCGCCCGAGCGGCCATCGAGAAGGTGAATGGGATGCTGTGCAATAATCA
GAAGGTGCATGTGGTCAAGTTCATACCACGGCGGGACCGGGAGCAGGAGA
AGGCCCACGCACTTCAAGAATCTGTATGTGAAGAACCCTCAGCGAGGAGT
TCACCGAGCAGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACC
AGTCACAAAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTTCGGTT
GCGTCGCCTACGAGAACCCACAGTCGGCGCTGGCCGCCGTAATTGGGCCT
GCACGGCAAGCAGCTGGGCCGACACACGTTTCTTGTTACGTGGCAAGAGC
CCTCACCAGGCCGAGCGGCGGCAGGAGATCTGTCGCAAGCTGGAAGGAGC
GCAAGCGCAGAGGCCGGCAGATAATTCTACTACGCAAGCTTTCTAGAACA
TTTCGTTGGCCGCGCGGGGCCCAGGAAGATGGCCTAATCTTAATCTAATC
CTAATCATAATCCCACCTAGCCTAGGAATATCCTGGTCATGACTAAGGGC
TTGGAATTCTCACCAATAAAAAAACGCCCCGGGCGGGCAACCGAAGCGTT
CCCGAAACAAATCCCGAATGGAGATTCTCGAAA
FMO06612.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-RC | 3922 | CG4612-RC | 555..1475 | 9..933 | 4210 | 97.8 | Plus |
| CG4612-RA | 2091 | CG4612-RA | 555..1475 | 9..933 | 4210 | 97.8 | Plus |
| pAbp-RA | 2433 | CG5119-RA | 477..656 | 357..536 | 225 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24524775..24525472 | 708..9 | 3400 | 99.7 | Minus |
| 2R | 25286936 | 2R | 24524349..24524544 | 907..709 | 600 | 92.5 | Minus |
| 2R | 25286936 | 2R | 18143526..18143705 | 357..536 | 225 | 75 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2067..2131 | 207..273 | 114 | 65.7 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1184..1248 | 207..273 | 114 | 65.7 | Plus |
FMO06612.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:46 Download gff for
FMO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 547..1483 | 1..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:26:46 Download gff for
FMO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 552..1488 | 1..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:25 Download gff for
FMO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 547..1483 | 1..941 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:25 Download gff for
FMO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24524774..24525480 | 1..710 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:46 Download gff for
FMO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20412297..20413003 | 1..710 | 99 | | Minus |
