FMO06613.5prime Sequence
735 bp (649 high quality bases) assembled on 2008-09-29
> FMO06613.5prime
CTGGCGGATCCGGTGGCCTGGAGAAGAGTGCCCTGGCGGCGCTGAGGAAG
AAAACCGGATACACCTTCGCCAATTGCAAGAAGGCGCTGGATAAGCACAA
CAACGACGTCGGATTGGCTGAAAAGTGGCTGCACGAGCAGGCCCAGACCC
TCGGCTGGTCGAAGGCCACCAAGGTCGCAGATCGAGCCACTGCACATGGT
CTGATTGGAGTGCTCATCCGCGGAAACCGGGGCGCCATGGTCGAGCTGAA
TTGCGAGACGGATTTCGTAGCCAGGAACGATACCTTCAAGCGGTTCGTTG
ACCACGTCGCCTGCATGTGTCTGCAATACACGGACTTGACGGACTTCGAT
GGAGATCTGTGGAAGCTTGGCTTTGATGCGGACGCCCTCAGAAACTTGCG
CACGGAGGAGGGACGCACGTTGGGCGACCACCTGGCTCTGCTGATCGGCG
CCATCGGGGAGAATGCCACCATCCGGCGCGCATTGTGCTTTAAGGCTAAC
AACGACCTGAAAGCTGGTGGGCTACGCCCATCCCGCACCCACCAATGTGC
GCACCACGGAAAGGCATCACCCAGGTGGGCAAGTACGGAGCGATCGTAGC
CTACCCGATCCCGCACCCCCTGCTGGACTTTGAGTTTCACAAAGCATTTG
CCAGCAATCGTGGGCATGAAGCCGACAAGATCGGCGAATATGACAAGACA
AGCCGGCGGAGACAAGACGATGAGACGTGCCTGAT
FMO06613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6412-RA | 1526 | CG6412-RA | 500..1238 | 1..735 | 3430 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17499556..17499931 | 735..364 | 1405 | 95.8 | Minus |
| 2L | 23513712 | 2L | 17500035..17500284 | 365..116 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 17500491..17500607 | 117..1 | 570 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:34 has no hits.
FMO06613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:27 Download gff for
FMO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 500..1238 | 1..735 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:00 Download gff for
FMO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 503..1241 | 1..735 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:14 Download gff for
FMO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 500..1238 | 1..735 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:14 Download gff for
FMO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17499556..17499929 | 366..735 | 97 | <- | Minus |
| 2L | 17500035..17500283 | 117..365 | 100 | <- | Minus |
| 2L | 17500492..17500607 | 1..116 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:27 Download gff for
FMO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17499556..17499929 | 366..735 | 97 | <- | Minus |
| arm_2L | 17500035..17500283 | 117..365 | 100 | <- | Minus |
| arm_2L | 17500492..17500607 | 1..116 | 99 | | Minus |
