FMO06614.5prime Sequence
1130 bp (865 high quality bases) assembled on 2008-09-29
> FMO06614.5prime
CAGTCGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCGAGGGCAAC
AAACAGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGCAGTCGCGA
TGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGGCACCGATC
GCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCAATGGCAGC
TTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAACTGGTGGC
AATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGAATTGCAAA
TAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTACTTTTTC
TATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTAGTCCTCGA
ATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCAAAACCA
AGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATCAACTGTTC
AGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGATATCAA
GCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGCTCTGTG
ACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTATCGTAT
ATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGCCATCAA
TTATACAACAAAGATCGATGTCTGGAGTGCCCGGTTGCGTTTTGGCCGAA
CTGCTGCTGGGGCCACCCCATCTTCCCTGGCGATTCCGGTGTGGGATCAG
CTCGTCGAGGTCATCAATGTCCTGGGCACAACGACAAGAGAACAGATACG
CGAAATGAATCCAAACTACACGGAACTTCAAGCTCCCCTCAAATTAAGAG
TCTTCCATGGCAGAAAGTCGTTCCGTATACGCACTTCGTACAGAAGCTAT
TCACTTGGTGTCCCTGCCTGCTTCGAGTAATCGCCCCAGTGCTAGGATCA
CACCGCTCAAGGCTTGCCCACATCCGTTCTTCGATGAACCCACGCATGGA
GGGTAATCCACCTTGCCCAAACGTTCGCATATGGCGCCGCCTGTTCAATT
ACAAGAGCATGGACTCTCTCAATAACAGCC
FMO06614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RC | 3110 | CG2621-RC | 549..1648 | 9..1118 | 4820 | 96.5 | Plus |
| sgg-RF | 4244 | CG2621-RF | 647..1746 | 9..1118 | 4820 | 96.5 | Plus |
| sgg-RE | 3055 | CG2621-RE | 494..1593 | 9..1118 | 4820 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2671307..2671545 | 479..717 | 1195 | 100 | Plus |
| X | 23542271 | X | 2669913..2670103 | 94..284 | 955 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 717..918 | 670 | 94.6 | Plus |
| X | 23542271 | X | 2671119..2671231 | 367..479 | 565 | 100 | Plus |
| X | 23542271 | X | 2642009..2642095 | 9..95 | 435 | 100 | Plus |
| X | 23542271 | X | 2670172..2670257 | 283..368 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373225 | 546..735 | 365 | 79.5 | Plus |
| X | 23542271 | X | 2672917..2673062 | 921..1070 | 305 | 89.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:30 has no hits.
FMO06614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:56 Download gff for
FMO06614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 483..1577 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:11 Download gff for
FMO06614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RJ | 927..2021 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:09 Download gff for
FMO06614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 483..1577 | 1..1103 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:09 Download gff for
FMO06614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2670174..2670257 | 285..368 | 100 | -> | Plus |
| X | 2671121..2671231 | 369..479 | 100 | -> | Plus |
| X | 2671308..2671545 | 480..717 | 100 | -> | Plus |
| X | 2641998..2642090 | 1..90 | 95 | -> | Plus |
| X | 2669913..2670103 | 91..284 | 98 | -> | Plus |
| X | 2671629..2671822 | 718..915 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:56 Download gff for
FMO06614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2564207..2564290 | 285..368 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 369..479 | 100 | -> | Plus |
| arm_X | 2536031..2536123 | 1..90 | 95 | -> | Plus |
| arm_X | 2563946..2564136 | 91..284 | 98 | -> | Plus |
| arm_X | 2565341..2565578 | 480..717 | 100 | -> | Plus |
| arm_X | 2565662..2565855 | 718..915 | 93 | -> | Plus |
