FMO06615.5prime Sequence
1113 bp (911 high quality bases) assembled on 2008-09-29
> FMO06615.5prime
CAGTCGACATGTCCCACCACAGCGATGATCAGCTCCTCCAGGCTGGAAGC
GATTCCTTCTGGGAGCCCGGCAACTACAAACGCACCACCAAGCGGATCGA
GGATGGTTACAAACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTG
CCGACATCGAGAAGGGATATGCGAAAAGCCTGCGCACCTGGTCAAAGAAA
TGGGGTGAACTCATTGAGAAAGGCCCGGAATACGGAACCACGGAGGCAGC
CTGGAAGGGCGTTCTGACGGAATCGGAACGCATCTCCGACGTTCACATGA
AGATCAAGGACAATCTCTGCAACGATGTGAACAGCCAGATAAAGACGTGG
CAGAAGGAGAACTACCACCACACGCTTATGCAGATCAAGGAGCGCAAGGA
CCTGGAGGATCTGTTCAAGAAGGCCCAGAAACCCTGGGCCAAGCTGCTGG
CAAAGGTCGAGAAGGCCAAAGCGGACTACCATTCGGCCTGCAAGACGGAG
CGCAGTGCTACCAATCAGGAACGCAATGCCAATGCCGATAGCTCGTTGTC
GCCGGATCAGGTGAAGAAAATGCACGACCGAGTGCAAAAGACCAAAGATC
AAGTGCAAAAGTGCCGGGAAAAGTACGAGCAGGCGATTGCCGAAATCACC
AAATACAATTCGGTGTACATCGAGGACATGACATCCGTGTTTGAAAAGTG
CCAAACCTTTGAGAAGACGCGTTTGCAGTTCTTCAAAGAAATCCTGTTCA
ACGTGCACTCGTGCCTGGACCCTCACAAAGTGCAAAGCCTGCCCCAATCT
ACGAGGAGTTCTCCCACACGATCAACAATGCAGACCAGCAGAAAGACCTA
AAATGGTGGTCGAACAATCATGGCATTTACATGGCTATGAATTGTCATTC
ATTTGTGTATATAACGGATGCAGTTCCGTGACATTGCCAAGGGCAACAAA
TCAAAGGAGGCACTGCCGCAGCACCCATCACGCTCATCAACCAGCGACCC
GTGCCGAGATGTGCACGAATACCCCCAGAACAAACAGCCTGAAAAGACCC
AGCACCTTGGACAATGTAGCAGCAAACGAGTTGAAGATTAATAGCGACCA
CGCAATCCTCAGT
FMO06615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synd-RB | 2022 | CG33094-RB | 79..1193 | 9..1113 | 4915 | 97 | Plus |
| Synd-RD | 2287 | CG33094-RD | 79..1196 | 9..1113 | 4875 | 96.7 | Plus |
| Synd-RC | 2281 | CG33094-RC | 73..1190 | 9..1113 | 4875 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20837583..20837924 | 221..562 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 20838033..20838261 | 559..787 | 1055 | 97.4 | Plus |
| 3R | 32079331 | 3R | 20835875..20835985 | 113..223 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 20835228..20835331 | 9..112 | 520 | 100 | Plus |
| 3R | 32079331 | 3R | 20838330..20838445 | 792..907 | 490 | 94.8 | Plus |
| 3R | 32079331 | 3R | 20838526..20838608 | 922..1003 | 335 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:43 has no hits.
FMO06615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:15 Download gff for
FMO06615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 71..1193 | 1..1113 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:04 Download gff for
FMO06615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 85..1207 | 1..1113 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:04 Download gff for
FMO06615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 71..1193 | 1..1113 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:04 Download gff for
FMO06615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20835222..20835331 | 1..112 | 97 | -> | Plus |
| 3R | 20835875..20835984 | 113..222 | 100 | -> | Plus |
| 3R | 20837585..20837922 | 223..560 | 100 | -> | Plus |
| 3R | 20838035..20838261 | 561..787 | 98 | -> | Plus |
| 3R | 20838325..20838445 | 788..906 | 94 | -> | Plus |
| 3R | 20838513..20838623 | 907..1016 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:15 Download gff for
FMO06615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16660944..16661053 | 1..112 | 97 | -> | Plus |
| arm_3R | 16661597..16661706 | 113..222 | 100 | -> | Plus |
| arm_3R | 16663307..16663644 | 223..560 | 100 | -> | Plus |
| arm_3R | 16663757..16663983 | 561..787 | 98 | -> | Plus |
| arm_3R | 16664047..16664167 | 788..906 | 94 | -> | Plus |
| arm_3R | 16664235..16664345 | 907..1016 | 92 | -> | Plus |
