FMO06617.5prime Sequence
892 bp (-73 high quality bases) assembled on 2008-10-01
> FMO06617.5prime
CTTATAACAAGTTATCAGTCGACATGCCCGTGAAAACAGTGAATCGCCAG
CAGAGCCAAACGCCCGCCCAACAACTGCAATTGCAGCAGCAGCGGGACGT
CGAGAATGGGCTCTATCCCACGATTCCGGCCGAGCGACGATCGCCCCCCT
CGCGTCCGCAAACGCTGCGACAGGACACCATCGATATGGAGGAAATACCG
CTCAATCAGACGAACAGCCAGGAGCCAGAGGATCGGCGCAAAATGCACGA
GATATTTGACAAGCACGACTCTGACAGAGATGGGCTGATCAACACGCACG
AGCTGAAGGAACTGATCTCGGATGGCTATTGCCGGGACATTCCCGCCTAC
ATCGCCGACCAGATCCTGAAGCGCAGCGATCAGGATAACGACGGCCACCT
GGACTTCGAGGAATTCTATGCGATGTCCCTGCGCCACAAGTGGATGGTGC
GCAACATGCTGACCCGCTACTGTCGCTACGTTGTGCCGCCACCGAAGCCC
TTAGAGGGCGATGAGCCCGACGGTGCCTACGAGAAGCAAATGTCCATCTG
CCCGCCGCCGCTCACCATGGTGCTCTTCTCGATTATCAAGATAATCATGT
TCCTCGTGGACGTCATACATTTCCAGGACGATCCCACTACCAGGATCGCA
TAGGCGAGAGCACAAGTGGACCAACGGCCACCCTGTTCATCTTACAATCC
GTACAGCGCTATGAGGGGATGGGCGCTTTGTTAGCTACATGTTCGTTCAC
GTGGGCATCATGCATCTGATGATGAACCTGATTATCCAGATCTTTCTGGG
CTTGCCCAGGAGCTGGTGCATCACTGGTTGTGCGTGGGTCTGGCCTACCT
GGCTGGCGTGGTACCGGGTTCCATGGACACCTCGCTAACAGT
FMO06617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-4-RB | 2345 | CG1697-RB | 250..1115 | 24..889 | 4030 | 98 | Plus |
| rho-4-RA | 2057 | CG1697-RA | 250..1115 | 24..889 | 4030 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11604310..11604674 | 262..626 | 1810 | 99.7 | Plus |
| X | 23542271 | X | 11600087..11600326 | 24..263 | 1200 | 100 | Plus |
| X | 23542271 | X | 11604736..11604999 | 626..889 | 890 | 93.3 | Plus |
| X | 23542271 | X | 11589621..11589726 | 24..129 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11591714..11591819 | 24..129 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11595900..11596005 | 24..129 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11587528..11587633 | 24..129 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11593807..11593912 | 24..129 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11597993..11598098 | 24..129 | 440 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:34 has no hits.
FMO06617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:12 Download gff for
FMO06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1119 | 24..892 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:39 Download gff for
FMO06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 247..1116 | 24..892 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:00 Download gff for
FMO06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1119 | 24..892 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:00 Download gff for
FMO06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11600087..11600326 | 24..263 | 100 | -> | Plus |
| X | 11604312..11604673 | 264..625 | 99 | -> | Plus |
| X | 11604736..11605003 | 626..892 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:12 Download gff for
FMO06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11494120..11494359 | 24..263 | 100 | -> | Plus |
| arm_X | 11498345..11498706 | 264..625 | 99 | -> | Plus |
| arm_X | 11498769..11499036 | 626..892 | 93 | | Plus |
