FMO06619.5prime Sequence
382 bp (183 high quality bases) assembled on 2008-10-01
> FMO06619.5prime
CATCTGGCACAACGAACTGGAGCAGCTGCAGGCGGCCATCGACCAGAACG
ATAAGGAGAAAATCGATCCCCGCGGCCGGACGCCACTGATGCTGGCTGTG
AGATTGGCCAATTTGCCATGCGTTAAATGCCTTCTGGCGGCCAAATGCAA
TGCGACCTATGAGTACGAAGGCTGGTCTATTGTCCAGGAAGCGGTCTGCA
CCGGCGATGTGGACATACTGACGGCCATCATCGAAGTCCGGGATCTCCAG
CGTCATGTCCAGCGGGTTACGCATGTGCCTAAGCTGCTGCAGCACCTATT
GGACGCACCAGATTTCTACATCAAGATGAAGTGGGAATTCACCTCCTGGG
TGCCTCTGATGTCGCGTCTCTGTCCCAGCAAC
FMO06619.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 174..552 | 1..379 | 1865 | 99.5 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 174..552 | 1..379 | 1865 | 99.5 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 121..499 | 1..379 | 1865 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19136438..19136637 | 379..180 | 985 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19136697..19136830 | 177..44 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 19136951..19136996 | 46..1 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:00 has no hits.
FMO06619.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:49 Download gff for
FMO06619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 121..502 | 1..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:34 Download gff for
FMO06619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RC | 288..669 | 1..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:23 Download gff for
FMO06619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 121..502 | 1..382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:23 Download gff for
FMO06619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19136435..19136637 | 180..382 | 99 | <- | Minus |
| 2R | 19136695..19136827 | 47..179 | 99 | <- | Minus |
| 2R | 19136951..19136996 | 1..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:49 Download gff for
FMO06619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15023940..15024142 | 180..382 | 99 | <- | Minus |
| arm_2R | 15024200..15024332 | 47..179 | 99 | <- | Minus |
| arm_2R | 15024456..15024501 | 1..46 | 100 | | Minus |
