FMO06620.5prime Sequence
788 bp (788 high quality bases) assembled on 2008-10-01
> FMO06620.5prime
ATAAAAAGAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTA
ACCATATTCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGA
GGCCGTTCGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCG
TTGTGCTTGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGA
AAGGTGCGCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGC
CGGTCTCACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGT
GCCAGAGCCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATA
ACCAGATTCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCG
CCGTCCCTTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCT
CTGCGCATCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAG
GCTAACGCCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAA
GTCCTACCGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGG
CCATCCGTGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAG
GTGGCCATCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGT
CATTACCGATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCG
AGAAGAAGAAACAGAAAAAGGCAAGCTTTCTAGACCAT
FMO06620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4-RA | 1176 | CG3422-RA | 149..895 | 24..770 | 3735 | 100 | Plus |
| Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 24..693 | 1175 | 78.9 | Plus |
| Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 36..514 | 880 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16276890..16277306 | 354..770 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 20748349..20749018 | 693..24 | 1175 | 78.4 | Minus |
| X | 23542271 | X | 16276596..16276826 | 125..355 | 1155 | 100 | Plus |
| X | 23542271 | X | 16276418..16276521 | 24..127 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 24501794..24501988 | 353..159 | 390 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:26:58 has no hits.
FMO06620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:46 Download gff for
FMO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4-RA | 142..898 | 16..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:31 Download gff for
FMO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros28.1-RA | 140..896 | 16..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:58 Download gff for
FMO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4-RA | 142..898 | 16..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:58 Download gff for
FMO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16276418..16276519 | 24..125 | 100 | -> | Plus |
| X | 16276597..16276826 | 126..355 | 100 | -> | Plus |
| X | 16276892..16277309 | 356..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:46 Download gff for
FMO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16170451..16170552 | 24..125 | 100 | -> | Plus |
| arm_X | 16170630..16170859 | 126..355 | 100 | -> | Plus |
| arm_X | 16170925..16171342 | 356..774 | 99 | | Plus |
