FMO06621.5prime Sequence
547 bp (-67 high quality bases) assembled on 2008-09-29
> FMO06621.5prime
TTTATACGAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTG
ATGGCGGAATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGC
CGGCCCCATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCG
GACCTGATGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATC
TTTCCGACCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGA
CATGTTCCATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATAC
TACACGCACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGC
TGGAGTCCTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCAT
GCTGGCGGAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTA
TGTGGCGCGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTG
CGCAAAACTCTTGGTTTACCGGCGGCAAGCTTTCTAGACCATTCGTC
FMO06621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc7-RB | 1886 | CG4443-RB | 325..825 | 24..524 | 2490 | 99.8 | Plus |
| Ubc7-RA | 1435 | CG4443-RA | 325..825 | 24..524 | 2490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16594271..16594530 | 149..408 | 1285 | 99.6 | Plus |
| X | 23542271 | X | 16594690..16594806 | 408..524 | 585 | 100 | Plus |
| X | 23542271 | X | 16594106..16594187 | 67..148 | 410 | 100 | Plus |
| X | 23542271 | X | 16594001..16594043 | 24..66 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:47 has no hits.
FMO06621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:35 Download gff for
FMO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crl-RA | 325..828 | 24..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:13 Download gff for
FMO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crl-RA | 323..826 | 24..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:49 Download gff for
FMO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc7-RA | 325..828 | 24..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:49 Download gff for
FMO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16594001..16594043 | 24..66 | 100 | -> | Plus |
| X | 16594106..16594187 | 67..148 | 100 | -> | Plus |
| X | 16594271..16594530 | 149..408 | 99 | -> | Plus |
| X | 16594691..16594809 | 409..528 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:35 Download gff for
FMO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16488034..16488076 | 24..66 | 100 | -> | Plus |
| arm_X | 16488139..16488220 | 67..148 | 100 | -> | Plus |
| arm_X | 16488304..16488563 | 149..408 | 99 | -> | Plus |
| arm_X | 16488724..16488842 | 409..528 | 98 | | Plus |
