FMO06622.5prime Sequence
609 bp (-75 high quality bases) assembled on 2008-10-01
> FMO06622.5prime
TTTGAGGCAAAGTTATCAGTCGACATGGGCGACTCACCGGAAGATCTGCG
CAGCAAGGATGTCGTGCCAGAGACCGCCGCCAAGGAGGCGGAAACTGGCA
AGGGCAAAAAGGAGAAGAAAGAAAAGTCGGCCGAGGGCACTAAGCCGAGG
CCGGCAAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGCGTTTC
CTTGCCGATGGGTGCTCCGGCAGCCAAGCCCACCATGCGGTTCATGCCCA
CCTACCGCCTGGAGTCCAAGAATCCGCTCAACAAGGAACGCGTGGAGAAC
ATCATAAAGGCGGTGATGAACCGACACTACAACGATGAGTACATGTTCCA
TCCCAAGCATTCCCTCCACATGGCCGCGCAAGTGAGCGAGGAAATCAAGA
ACCGCATCAAACTCGACAACTACGACAGATATCGCTACATAGTGCTGGTC
ACTGTGGGCGAGTTCCTGATGCAGGGCCTCTACTCCATGGTCAACTTCCT
GTGGGATGCTGAAAAAGACGGATTTGTGACCTACAGCGTGGAGAGACCCT
CGTACTTTGCAGTCTGCACCACCTTTTACCTGTACTACGATGCAAGCTTT
CTAGACCAT
FMO06622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14763-RC | 906 | CG14763-RC | 16..583 | 24..591 | 2810 | 99.6 | Plus |
| CG14763-RB | 690 | CG14763-RB | 16..583 | 24..591 | 2810 | 99.6 | Plus |
| CG14763-RA | 647 | CG14763-RA | 16..583 | 24..591 | 2810 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7967059..7967264 | 428..223 | 1015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7966842..7967007 | 591..426 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 7967886..7968009 | 147..24 | 590 | 98.4 | Minus |
| 2R | 25286936 | 2R | 7967319..7967400 | 228..147 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:45 has no hits.
FMO06622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:44 Download gff for
FMO06622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 8..587 | 15..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:44 Download gff for
FMO06622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 8..587 | 15..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:41 Download gff for
FMO06622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 8..587 | 15..596 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:41 Download gff for
FMO06622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7966838..7967004 | 429..596 | 98 | <- | Minus |
| 2R | 7967059..7967258 | 229..428 | 100 | <- | Minus |
| 2R | 7967319..7967399 | 148..228 | 100 | <- | Minus |
| 2R | 7967886..7968017 | 15..147 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:44 Download gff for
FMO06622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3854343..3854509 | 429..596 | 98 | <- | Minus |
| arm_2R | 3854564..3854763 | 229..428 | 100 | <- | Minus |
| arm_2R | 3854824..3854904 | 148..228 | 100 | <- | Minus |
| arm_2R | 3855391..3855522 | 15..147 | 95 | | Minus |
