FMO06623.5prime Sequence
731 bp (731 high quality bases) assembled on 2008-09-29
> FMO06623.5prime
CAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGGCCTCGCAG
TTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCAAAGGCGGT
GGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGCCGTGGTGC
TGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAGACGCCGGC
GGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTGGCCGGCTT
GGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGAGGCAGCCA
ACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACCTGTGCCAC
CGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCCGTCCGCCC
CTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGCCTGCGCCA
GCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGCTCAAGATG
GATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATCATCTACAA
AGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAATGGGTTTGG
TGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAGAACTGACG
GAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAAGACAGCGA
CAATGAGACGCACGCAAGCTTTCTAGACCAT
FMO06623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 9..429 | 2105 | 100 | Plus |
| Prosalpha7-RA | 976 | CG1519-RA | 589..878 | 424..713 | 1450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9847239..9847638 | 429..30 | 2000 | 100 | Minus |
| 2R | 25286936 | 2R | 9846734..9846905 | 713..542 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 9847073..9847190 | 541..424 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 464..513 | 136 | 80 | Plus |
FMO06623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:21 Download gff for
FMO06623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..538 | 1..427 | 99 | <- | Plus |
| Prosalpha7-RA | 593..883 | 428..721 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:26:57 Download gff for
FMO06623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RB | 111..827 | 1..721 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:20 Download gff for
FMO06623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..538 | 1..427 | 99 | <- | Plus |
| Prosalpha7-RA | 593..883 | 428..721 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:20 Download gff for
FMO06623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9846729..9846905 | 542..721 | 97 | <- | Minus |
| 2R | 9847073..9847192 | 423..541 | 98 | <- | Minus |
| 2R | 9847246..9847638 | 30..422 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:21 Download gff for
FMO06623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5734234..5734410 | 542..721 | 97 | <- | Minus |
| arm_2R | 5734578..5734697 | 423..541 | 98 | <- | Minus |
| arm_2R | 5734751..5735143 | 30..422 | 100 | <- | Minus |
