FMO06626.5prime Sequence
494 bp (494 high quality bases) assembled on 2008-09-29
> FMO06626.5prime
CAGTCGACATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACT
CTTGAGGTCGAACCGTCGGATACTATCGAAAATGTCAAAGCCAAGATTCA
GGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGCA
AGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAG
TCCACTTTGCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCGCAA
GAAGAAGAACTACTCCACTCCCAAGAAAATCAAGCACAAGAGGAAGAAGG
TCAAGCTAGCTGTCCTGAAATACTACAAGGTTGACGAGAACGGCAAGATC
CACCGTCTCCGTCGCGAGTGCCCTGGTGAGAACTGCGGCGCCGGCGTCTT
CATGGCTGCCCACGAAGATCGTCACTACTGCGGCAAGTGCAACCTGACCT
TTGTCTTCAGCAAACCAGAGGAAAAGGCAAGCTTTCTAGACCAT
FMO06626.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS27A-RA | 592 | CG5271-RA | 56..523 | 9..476 | 2340 | 100 | Plus |
| RpL40-RB | 659 | CG2960-RB | 123..350 | 9..236 | 705 | 87.8 | Plus |
| RpL40-RA | 587 | CG2960-RA | 65..292 | 9..236 | 705 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10409731..10410053 | 9..331 | 1615 | 100 | Plus |
| 2L | 23513712 | 2L | 10410239..10410387 | 328..476 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 4228025..4228252 | 9..236 | 705 | 87.3 | Plus |
| X | 23542271 | X | 6277382..6277609 | 235..8 | 585 | 83.8 | Minus |
| X | 23542271 | X | 6277610..6277837 | 235..8 | 585 | 83.8 | Minus |
| 3L | 28110227 | 3L | 3900848..3901075 | 236..9 | 585 | 83.8 | Minus |
| X | 23542271 | X | 6277149..6277381 | 240..8 | 580 | 83.3 | Minus |
| X | 23542271 | X | 6278294..6278521 | 235..8 | 570 | 83.3 | Minus |
| X | 23542271 | X | 6278522..6278748 | 235..9 | 565 | 83.3 | Minus |
| X | 23542271 | X | 6277838..6278065 | 235..8 | 555 | 82.9 | Minus |
| X | 23542271 | X | 6278066..6278293 | 235..8 | 555 | 82.9 | Minus |
| X | 23542271 | X | 6282957..6283184 | 235..8 | 540 | 82.5 | Minus |
| X | 23542271 | X | 6282729..6282956 | 235..8 | 510 | 81.6 | Minus |
| X | 23542271 | X | 6282501..6282728 | 235..8 | 480 | 80.7 | Minus |
| X | 23542271 | X | 6282306..6282500 | 202..8 | 450 | 82.1 | Minus |
| X | 23542271 | X | 6280764..6280882 | 127..9 | 220 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:21 has no hits.
FMO06626.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:47 Download gff for
FMO06626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS27A-RA | 56..529 | 9..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-09-29 11:27:18 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:10 Download gff for
FMO06626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS27A-RA | 56..529 | 9..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:10 Download gff for
FMO06626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10409731..10410051 | 9..329 | 100 | -> | Plus |
| 2L | 10410241..10410393 | 330..485 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:47 Download gff for
FMO06626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10409731..10410051 | 9..329 | 100 | -> | Plus |
| arm_2L | 10410241..10410393 | 330..485 | 97 | | Plus |
