FMO06627.5prime Sequence
776 bp (776 high quality bases) assembled on 2008-10-01
> FMO06627.5prime
CAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTATTAGCGAC
AACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTACACCAGCAT
ACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGATGGCTTCA
GTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACACCAGATGAA
CCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAGGATATCGG
CGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAAAATGGGCG
CCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGGGCCTCACA
GAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTGGACTATCT
GCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTACAGATACG
CCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATATACTCACT
GCCAAAGCCATGCTTCAACTACTTTTGGGCAAAACATTGGCCTCTGTATC
CACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGATCAACAAA
GATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCATTGATCT
ATCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGATGAGTTTG
TTGAATGGCTGCGCCTGCAGCGGAGTCAGGTCACCTCCACAACCGGATCT
AGCGCAAGCTTTTCTAGACCATTCGT
FMO06627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6597-RE | 1289 | CG6597-RE | 174..918 | 8..753 | 3705 | 99.9 | Plus |
| CG6597-RB | 1947 | CG6597-RB | 515..1259 | 8..753 | 3705 | 99.9 | Plus |
| CG6597-RA | 1295 | CG6597-RA | 180..924 | 8..753 | 3705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20308093..20308348 | 213..468 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 20308407..20308617 | 466..677 | 1010 | 99.5 | Plus |
| 3L | 28110227 | 3L | 20303232..20303345 | 8..121 | 570 | 100 | Plus |
| 3L | 28110227 | 3L | 20307828..20307924 | 119..215 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 20308747..20308823 | 677..753 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:20 has no hits.
FMO06627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:05 Download gff for
FMO06627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RA | 172..924 | 1..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:26 Download gff for
FMO06627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RB | 465..1217 | 1..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:52 Download gff for
FMO06627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RA | 172..924 | 1..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:52 Download gff for
FMO06627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20308094..20308347 | 214..467 | 100 | -> | Plus |
| 3L | 20308409..20308616 | 468..676 | 99 | -> | Plus |
| 3L | 20308747..20308823 | 677..753 | 100 | | Plus |
| 3L | 20307831..20307922 | 122..213 | 100 | -> | Plus |
| 3L | 20303224..20303345 | 1..121 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:05 Download gff for
FMO06627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20296324..20296445 | 1..121 | 96 | -> | Plus |
| arm_3L | 20300931..20301022 | 122..213 | 100 | -> | Plus |
| arm_3L | 20301194..20301447 | 214..467 | 100 | -> | Plus |
| arm_3L | 20301509..20301716 | 468..676 | 99 | -> | Plus |
| arm_3L | 20301847..20301923 | 677..753 | 100 | | Plus |
