FMO06628.5prime Sequence
713 bp (638 high quality bases) assembled on 2008-10-01
> FMO06628.5prime
CAGTCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTTTGGCCAGC
ATCTGCATGACCCAGGCATATCCGGCTTTGTTGCCCTACATCTACAATCC
TTCCAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGACGATGTAA
GTGAACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGGCCAAGCGT
CAGCACGATGGAAGTACAGCCCGCACCACCACTACCACCAAGGAGAGTGT
CGAGGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAATGCGAATA
TTATGCCCGACTTGGAGAGGCAGTTGGAGGTGGCGACGCCTCTGATTTCC
ACCACTACAACCACTAGCACGTCGGCCACCACCACTACGGCGACGTCCAA
GGAGGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCAGATCAAAA
CCGTAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCTTCTTGCGT
AGTCCGAATGGTCAGTACTCTTCGTTCGACATGGCCCAGTATATTTTTTG
GACTGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACTGGTTGAGG
GGAAAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCACGACATTCGC
TGGGAATAGAGTTCTTGCAGCGGTCCTATGCCAATCGATTTTTCCCCGAA
GAGGTTCCCCAAA
FMO06628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..810 | 8..711 | 3455 | 99.4 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..815 | 8..711 | 3455 | 99.4 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 106..577 | 8..479 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 479..97 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 608..478 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 96..8 | 445 | 100 | Minus |
| 3R | 32079331 | 3R | 13374677..13374781 | 711..608 | 430 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:17 has no hits.
FMO06628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:35 Download gff for
FMO06628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..814 | 1..710 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:22 Download gff for
FMO06628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 150..624 | 1..479 | 99 | -> | Plus |
| CG9813-RA | 1021..1252 | 480..710 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:22 Download gff for
FMO06628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..814 | 1..710 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:22 Download gff for
FMO06628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13379003..13379094 | 1..96 | 95 | | Minus |
| 3R | 13374678..13374780 | 609..710 | 96 | <- | Minus |
| 3R | 13377533..13377661 | 480..608 | 100 | <- | Minus |
| 3R | 13378402..13378784 | 97..479 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:35 Download gff for
FMO06628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9200400..9200502 | 609..710 | 96 | <- | Minus |
| arm_3R | 9203255..9203383 | 480..608 | 100 | <- | Minus |
| arm_3R | 9204124..9204506 | 97..479 | 100 | <- | Minus |
| arm_3R | 9204725..9204816 | 1..96 | 95 | | Minus |
