FMO06630.5prime Sequence
494 bp (494 high quality bases) assembled on 2008-09-29
> FMO06630.5prime
CAGTCGACATGAGCAATAGCGAGGACTCGCAGCAGTATCTGAACGACATG
CTGGTCAAGGAGGAGGACGAGGCGTCCGGCGACGATTCGGACAAACAGGA
TGGAGGGATAATGCTACGCGAACAGGACCGATTTCTGCCCATCTGCAACA
TCATTAAGATCATGAAGGTTCCGGTGCCCCAGAACGGCAAGATAGCCAAG
GATGCACGAGAGTGCATCCAGGAGTGTGTCTCCGAGTTCATATCCTTCAT
TAGCAGTGAGGCCATCGAACGTAGCGTCGCGGAGAATCGCAAGACAGTCA
ACGGGGACGACCTGCTGGTGGCGTTCAGCAATCTGGGATTCGACAATTAC
GTGGAACCACTGTCCATTTACCTGCAAAAGTACCGAGAGTCGAACAAATC
GGATCGTAATCTCTTTCTGGACGCCAGTTATCCGCACAACGAAGATGGGT
CCTCCGCAAACGATGCGGGGAAACAGGCAAGCTTTCTAGACCAT
FMO06630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YB-RB | 796 | CG10447-RB | 93..560 | 9..476 | 2340 | 100 | Plus |
| Nf-YB-RA | 928 | CG10447-RA | 93..560 | 9..476 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19736272..19736580 | 81..389 | 1545 | 100 | Plus |
| 2L | 23513712 | 2L | 19736632..19736720 | 388..476 | 445 | 100 | Plus |
| 2L | 23513712 | 2L | 19736136..19736208 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 583..664 | 106..23 | 135 | 65.5 | Minus |
FMO06630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:54 Download gff for
FMO06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YB-RA | 87..563 | 1..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:26 Download gff for
FMO06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10447-RA | 76..552 | 1..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:23 Download gff for
FMO06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YB-RA | 87..563 | 1..480 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:23 Download gff for
FMO06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19736130..19736208 | 1..81 | 95 | -> | Plus |
| 2L | 19736273..19736580 | 82..389 | 100 | -> | Plus |
| 2L | 19736634..19736723 | 390..480 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:54 Download gff for
FMO06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19736130..19736208 | 1..81 | 95 | -> | Plus |
| arm_2L | 19736273..19736580 | 82..389 | 100 | -> | Plus |
| arm_2L | 19736634..19736723 | 390..480 | 97 | | Plus |
