FMO06631.5prime Sequence
630 bp (-73 high quality bases) assembled on 2008-10-01
> FMO06631.5prime
ATTAAAAAAGCCTATCAGTCGACATGTCGGATCTCTTTACCCCTTTCGAT
AGCAACGGCGTCGCCGAGCACCACCTGCACCACAACCACAACTCCACATC
GTCCGCCAGCGGACTGCTCCACGACCCACCCATGGCCTCGCCCTCCCAGC
ACAGTCCGATGACCAACAACAGCAACTCATCCTCGCAGAACGGCGGACCG
GTTTCCGGTTTGGGTACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTC
ATCCAATCACACATCATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTA
CCAAACCGCGTCTCACAGAGCTCGTCCGAGAGGTGGATACCACCACGCAG
CTGGACGAGGATGTTGAGGAGCTTCTGCTTCAGATCATCGACGACTTTGT
CGAGGACACCGTCAAGTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTA
ACAAGATCGAGGTGCGCGACGTGCAGCTGCACTTTGAGCGGAAGTACAAC
ATGTGGATACCCGGCTTCGGTACGGACGAACTGCGTCCCTACAAGCGGGC
AGCTGTCACGGAGGCGCACAAACAGCGCCTTGCCCCTCATACGGAAAACG
ATCAAGAAATACGCAAGCTTTCTAGACCAT
FMO06631.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf12-RA | 1234 | CG17358-RA | 478..1065 | 24..612 | 2905 | 99.7 | Plus |
| Taf12-RB | 1066 | CG17358-RB | 310..897 | 24..612 | 2905 | 99.7 | Plus |
| Taf12-RE | 897 | CG17358-RE | 170..728 | 53..612 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11678555..11678872 | 612..294 | 1545 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11678944..11679213 | 293..24 | 1335 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:42 has no hits.
FMO06631.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:28 Download gff for
FMO06631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RB | 306..897 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:41 Download gff for
FMO06631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RA | 422..1013 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:20 Download gff for
FMO06631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RB | 306..897 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:20 Download gff for
FMO06631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11678555..11678872 | 294..612 | 99 | <- | Minus |
| 3R | 11678944..11679217 | 17..293 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:28 Download gff for
FMO06631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7504277..7504594 | 294..612 | 99 | <- | Minus |
| arm_3R | 7504666..7504939 | 17..293 | 98 | | Minus |
