FMO06636.5prime Sequence
1132 bp (930 high quality bases) assembled on 2008-09-29
> FMO06636.5prime
CAGTCGACATGAATGTTCACAAGCGGCCACGTCTGAATATGGAATTCGGC
TCCTCCACCAGCAATACCAACACTTCCACATCCCCGTCCTCCGTAAATAT
CAGCAATGCGAATCCAACAGCTGGACCTGGCCTCATGACCATTACCAATC
ACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCTTTGCCAAT
GGTCAGCAAAGTCTGATTCTCACCAGCGACACGGGAAATCCGCTGATGAA
TAGCCAAGGTGCTCAGATATTTCTCACCATTTGCGGAGACGAGAACTCGG
ACGATTCGCAGGAGTACTATACGATTAAACAGGAACCGGGATGTGATCTA
GATATCCATTCGCTGCTGCCTAGCAATTTGCAGCTGCCCAACAATCTGCA
GCTGCCCACTGGCTGTGAGATATATTTGGTCAAGGAAACCGGCAGCTTAA
TGGGTGAGCCGCCGACGAAGGCGGCCATCAAGCTGGAACTAGATACGCTA
AGCGAAAAGCCGCTCCTTCCATCTGTTACAACTTCCTCCAGCACACAGTC
CGCGGTAATAACCGCCCAGACCGTGAATCCTCCCATTCCAGGTAACATCA
ACACCACCACCAGCACCACTAGCACCACCACCACCACCAGTGTCCTGTAT
GGCTCCCATGGCAATGGTCATGGCCATGGCCATGCTCACGCCCAAGCCCG
ATCCCAGCCAGAATCAGCTGGCCAACACCATCCAGCAAACTGGAGGCGTA
CAAGAAACGCGATGATAAACGTCGTGCCCCGCACAACGAGGTCGAACGCC
GGCGCCGCTGACAAGATCAACAGCTGGATCTTCAAGCTTGAGGAGATGCT
GCCCAGTCTGAGCTCCAGCTCCAGTTTTCAGCGAGGCCAGCACGATGTCC
AGCACAGCCGGAAGTACGAGTACCAACGGAAGTAGTCATTTCAAAGGCAA
TGCTAGCAGTTTCAGCGACGACGCCGCCAATGACTCAATCGTAAATCTGA
TCAAGCATGCGATTACTTCAGAACATGCAGGCGAGAATGACACGGCAGCT
TTCATGACATTCGTTTGGCCGCCGGGCCCAGTAGTGTCATATCAATATCT
AATCATATCCAACTCACTAGCTAAGGAATCCT
FMO06636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Usf-RC | 3617 | CG17592-RC | 367..1410 | 9..1044 | 4655 | 97.2 | Plus |
| Usf-RB | 2954 | CG17592-RB | 367..1410 | 9..1044 | 4655 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4547471..4548428 | 967..9 | 4455 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:12 has no hits.
FMO06636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:30 Download gff for
FMO06636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 337..1328 | 1..991 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:17 Download gff for
FMO06636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 826..1817 | 1..991 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:49 Download gff for
FMO06636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 362..1353 | 1..991 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:49 Download gff for
FMO06636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4547442..4548433 | 1..991 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:30 Download gff for
FMO06636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4441475..4442466 | 1..991 | 97 | | Minus |
