FMO06637.5prime Sequence
716 bp (1 high quality bases) assembled on 2008-09-29
> FMO06637.5prime
CAATCCACATGGGACGCAAGAAGAATAAGGCCTCCAAACCCTGGTGCTGG
TACTGCTACCGTGAGTTCTATGACAAAAAGATCCTTGTGCATCACCAGAA
GGCCAAGCACTTCAAATGCCACATCTGCCAATATAAGTTGTACACCGGAC
CCGGACTATCCATACGCTGCATGCAGGTGTACAAGGAAACGGTGGACTAG
GTCCCCACCTCGCTGCCCAATCGCTCAAATATTGAAGTCCAAATCTTTGG
CATGGACGGCATTCCCGCCGAGGATCTCAGGGATCACGAACGTCAGAAGA
ATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGCCAAAAAGAAA
GTACAATATGCCATGAGTGTACCGCCGCCTATGATGATGCCCCCGAACAT
GATGCCTCCGCACATGCTGGGGCAATAAGGCATGGGCATGATGTATCACA
TGCCGCCGCTGCCTCCATATCCAGTGCCCATGATGCCGCACATGATGCCT
CCGCGTCCTTTGTTTCCAGCCGCCATGGCCACAACATAAGCGGCAGATGC
TGCGGCGGCGGCCCATCATCACCTGGCCGCCGTTTTGGCTCAACAAAGCC
AACATTTCCAGCGTACAGTATTGCTAACATAAATGCTCCACCTACCGCAA
ATCATGCTGGTGGTGCATCCAGCGCACCACCAAGTGTTCCGTCAGATGCT
CAAATAAACCTAGCAA
FMO06637.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17912-RD | 6091 | CG17912-RD | 125..820 | 8..702 | 2885 | 94.4 | Plus |
| CG17912-RC | 4400 | CG17912-RC | 125..820 | 8..702 | 2885 | 94.4 | Plus |
| CG17912-RG | 3709 | CG17912-RG | 125..820 | 8..702 | 2885 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16743759..16744067 | 49..357 | 1350 | 95.8 | Plus |
| 2L | 23513712 | 2L | 16744124..16744385 | 358..618 | 1035 | 93.9 | Plus |
| 2L | 23513712 | 2L | 16744688..16744773 | 617..702 | 295 | 89.5 | Plus |
| 2L | 23513712 | 2L | 16743529..16743573 | 8..52 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:31 has no hits.
FMO06637.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:23 Download gff for
FMO06637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17912-RG | 123..828 | 3..710 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:38 Download gff for
FMO06637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17912-RB | 124..829 | 3..710 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:22 Download gff for
FMO06637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17912-RG | 123..828 | 3..710 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:22 Download gff for
FMO06637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16744124..16744385 | 358..618 | 93 | -> | Plus |
| 2L | 16743527..16743570 | 3..49 | 91 | -> | Plus |
| 2L | 16743760..16744067 | 50..357 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:23 Download gff for
FMO06637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16743527..16743570 | 3..49 | 91 | -> | Plus |
| arm_2L | 16743760..16744067 | 50..357 | 95 | -> | Plus |
| arm_2L | 16744124..16744385 | 358..618 | 93 | -> | Plus |
