FMO06638.5prime Sequence
1172 bp (933 high quality bases) assembled on 2008-10-01
> FMO06638.5prime
CAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCGGCGGCATG
ATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGCCAGAATGC
CGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGAGATATTGC
AACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCCAGGCCAGA
AAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTCTCTGTACT
TTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACACCCAGGAGG
AGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGCTGATTGCC
GAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCGGCTGCCTC
TGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGGTGCTGACA
ATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGATCCGTCAA
ATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAACGAGTTCAC
CACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAGACCCATTA
CACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAAAGTTTAGT
TCCATACAAATGCAGCTGAGCAGTCGACCTGCGAGGCTGTAATGATACTT
CGTTCGCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTTCAGCAAGCA
GGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGAGCAACCCAT
ATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGTTGCCATCAC
GGTCTCGCAAGTATCGAATTGGTTTGGCAACAAGCGTATTCGCTATAAGA
GAACATTGGTTAAGGCCAGGAGGAGGCCAATTTGTATGCCGCCAAAAGGC
GCTGGTGCTTCACGTATTCCATGGCCGGGCCAACCCAGCGGGACCACCAC
CCCCCTTGATGTCCCCCGGCTCCGCCCCAGGATTCATGGGTGTATCCCAA
TGGGGTTCCGGCCGATACCAACAGCAGCAACCGGTACGAACAACACTAGG
GCGGCTTCGAACCAAATCCTCCATTCAGGATCTAAGGCCCCGCAAGCTTT
TCATGAAACAATTGGCTTGGGG
FMO06638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| exd-RE | 2883 | CG8933-RE | 215..1343 | 8..1140 | 4935 | 96.7 | Plus |
| exd-RD | 2930 | CG8933-RD | 262..1390 | 8..1140 | 4935 | 96.7 | Plus |
| exd-RA | 2386 | CG8933-RA | 231..1359 | 8..1140 | 4935 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15993964..15994283 | 273..592 | 1600 | 100 | Plus |
| X | 23542271 | X | 15993508..15993773 | 8..273 | 1330 | 100 | Plus |
| X | 23542271 | X | 15994345..15994596 | 591..841 | 1210 | 99.6 | Plus |
| X | 23542271 | X | 15994684..15994915 | 851..1083 | 440 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:07 has no hits.
FMO06638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:39 Download gff for
FMO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exd-RA | 225..1220 | 1..994 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:36 Download gff for
FMO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exd-RC | 250..1245 | 1..994 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:15 Download gff for
FMO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exd-RA | 225..1220 | 1..994 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:15 Download gff for
FMO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15993502..15993773 | 1..273 | 98 | -> | Plus |
| X | 15993965..15994283 | 274..592 | 100 | -> | Plus |
| X | 15994347..15994605 | 593..851 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:39 Download gff for
FMO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15887535..15887806 | 1..273 | 98 | -> | Plus |
| arm_X | 15887998..15888316 | 274..592 | 100 | -> | Plus |
| arm_X | 15888380..15888638 | 593..851 | 98 | -> | Plus |
