FMO06639.5prime Sequence
1090 bp (1013 high quality bases) assembled on 2008-09-29
> FMO06639.5prime
CAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTGCGATGGCG
GGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGATATCCTAAC
GCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTCCGAACCGG
AACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGATCTCCAAG
TCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTGACCCAACC
CAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCTGCAGTATT
ATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAACGGGCACA
TCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCCTATTTTGG
ATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAGCAACGATT
CCGACTGCGACTCACCACCGCCATTGAGCAGTTCCCCCTCGGAGTCGCCG
CTATCCCACGACGGCAGTGGATTGAGCCGCAAGAAGCGGTCGCGTGCCGC
CTTCAGCCACGCCCAGGTCTTCGAGTTGGAGCGCCGCTTTGCCCAACAGC
GCTACTTGTCCGGTCCGGAACGCAGCGAGATGGCCAAGAGCCTGCGCCTG
ACGGAGACCCAGGTGAAGATCTGGTTCCAAACCGCCGCTACAAGACCAAG
CGCAAGCAGATCCAGCAGCACGAGGCCGCCCTTTTGGGTGCCAGCAAGAG
GGTTCCCGTCCAAGTCTTGGTGCGAGAGGATGGCAGCACCACCTACGCTC
ACATTGGCTGCTCCCGGTGCTGGACACGGCCTCGATCCCGCCCTGATCAA
CATCTACCGCCATCAGCTGCAGCTGGCCTACGGCGGACTTCCGCTGCACA
GATGCAGATGCCTTTCCCGCACTTTCACCCGCAACACAAGGTGCCGCAAC
CCATACCGGCACCAACCCAAAGTTCAGCTTTGTGACTGCCATCCTCGGGC
GCCCTCATCGCCAGTTCCCATCCCCATCCCGGGTGGCATGCGACCCCACG
ATAGTCCGTGTTCCAGTTCCCATGGCCAGATGATAGAGTG
FMO06639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bap-RA | 1449 | CG7902-RA | 136..1211 | 9..1084 | 4960 | 97.9 | Plus |
| vnd-RB | 3412 | CG6172-RB | 2147..2205 | 645..702 | 180 | 88.1 | Plus |
| vnd-RA | 3033 | CG6172-RA | 2100..2158 | 645..702 | 180 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21389580..21390211 | 453..1084 | 2575 | 95.9 | Plus |
| 3R | 32079331 | 3R | 21389015..21389459 | 9..453 | 2225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:33 has no hits.
FMO06639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:45 Download gff for
FMO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 136..1216 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:41 Download gff for
FMO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 133..1213 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:50 Download gff for
FMO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 136..1216 | 9..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:50 Download gff for
FMO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21389015..21389459 | 9..453 | 100 | -> | Plus |
| 3R | 21389581..21390216 | 454..1090 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:45 Download gff for
FMO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17214737..17215181 | 9..453 | 100 | -> | Plus |
| arm_3R | 17215303..17215938 | 454..1090 | 96 | | Plus |
