FMO06641.5prime Sequence
929 bp (899 high quality bases) assembled on 2008-10-01
> FMO06641.5prime
ATTAAACAAGCTTATCAGTCGACATGTCCTCCGCCGTTAACATCCAGATC
GTCTCTATGCCGAATCTGGCCAAGATCGAGAGCTTCCTGAAGGATGTCAG
CTACCGGGAGACGATCGAGTACAGTGCCAACTTCAACACGCGCTTGTGCA
GCGAACGGCGCCACCGGCTGCCCTTCCTCGATCCGCAGACAGGCGTCGCC
CAGAACCACTCGCAGCTCTTCCTGGACAAGCGACAGCGGATGCCCGGCTT
CCGGCAGGGCCAGATCTACACGTATCCGGCGGCCCGCTGGCGGAAGAGCC
GTCGTCAGTACTTGAGCAAGATGTACAGCCGCTTTCCCGAGCGTCCCTTC
CAGGCGCTACGCAAGGAGCACGAAGCTCTGGTGGCCAGCGGCGTCAATCT
GGGACTGAGCAGCCTGACCAGCGGTGTGGGCTCCATGCCCGGCAGCAATA
GCCTGGCCAGCAGCTCCTCCCTAACGCTCAATATGCTTACGGGCGGCGGA
GCCGCGCCGGCCGTACTTGGTTCCCTGCACAGTGACACTGCCCACGATTT
TAATGGAGCCTTCAGCCTGGAGGAGTCCAGCTCGCTGGGTGCCGCCGGCG
GTGATACATCCGACAGCAAGGACAGTCAACAGCAACAACATCAGCAGCAC
CAGCACCAGCAGCACGCCGTCAAAGAGGAGCTTTTGCCCAAGGAGTGGTT
CTACGATGACATGGATATGAACGATGTGGACTCGCTGGAGAGCCCAAATC
GCCGGCGGATGATGAGTACGATTATGATCCGCGCTATGGTAACAAAAAAA
GGCGCAAGCGGCGACCAGGCAAGCGAGTGGGAGATTCCGGCGGCGGTGGT
GGTGAGGAGGCGCCGGCGTGGCGGCAATTCCGGCGTAGCTCCAGCTCGCG
GAAACGCAGTGCAGCGGCCAGGTCCGTAT
FMO06641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 606..1517 | 23..929 | 4360 | 98.9 | Plus |
| tth-RB | 2955 | CG12175-RB | 423..1334 | 23..929 | 4360 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13614820..13615424 | 924..324 | 2765 | 98.7 | Minus |
| X | 23542271 | X | 13615676..13615981 | 328..23 | 1515 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 20:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2368 | 578..664 | 164 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6818 | 611..681 | 162 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6870 | 611..664 | 159 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6822 | 611..664 | 159 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6780 | 611..664 | 159 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2422 | 591..664 | 157 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1576 | 611..664 | 153 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6855 | 606..664 | 153 | 77 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6759 | 627..664 | 145 | 86.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6971 | 610..714 | 144 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2848 | 614..664 | 143 | 79.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1161 | 611..672 | 138 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2469..2522 | 611..665 | 137 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1564 | 627..664 | 136 | 84.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2431 | 611..661 | 134 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2424..2476 | 611..664 | 132 | 74.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1107 | 628..664 | 131 | 83.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7934..7998 | 590..661 | 129 | 68.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9378..9442 | 590..661 | 129 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2703 | 611..695 | 128 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1494..1552 | 603..664 | 122 | 71 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 155..192 | 627..664 | 118 | 78.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9185..9222 | 627..664 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1600 | 611..665 | 115 | 71.9 | Plus |
FMO06641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:03 Download gff for
FMO06641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1334 | 16..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:51 Download gff for
FMO06641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 370..1285 | 16..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:56 Download gff for
FMO06641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1334 | 16..929 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:56 Download gff for
FMO06641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13614814..13615419 | 329..929 | 98 | <- | Minus |
| X | 13615676..13615985 | 16..328 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:03 Download gff for
FMO06641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13508847..13509452 | 329..929 | 98 | <- | Minus |
| arm_X | 13509709..13510018 | 16..328 | 98 | | Minus |
